View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4827-Insertion-8 (Length: 482)

Name: NF4827-Insertion-8
Description: NF4827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4827-Insertion-8
NF4827-Insertion-8
[»] chr2 (3 HSPs)
chr2 (211-472)||(9805184-9805445)
chr2 (5-182)||(9805001-9805180)
chr2 (304-412)||(7688837-7688945)
[»] chr1 (2 HSPs)
chr1 (304-434)||(6191191-6191321)
chr1 (304-412)||(21873599-21873707)
[»] scaffold0002 (1 HSPs)
scaffold0002 (304-412)||(484264-484372)
[»] chr7 (1 HSPs)
chr7 (304-412)||(16434588-16434696)
[»] chr5 (2 HSPs)
chr5 (304-412)||(33260576-33260684)
chr5 (198-251)||(31560534-31560587)
[»] scaffold0057 (1 HSPs)
scaffold0057 (304-412)||(78805-78913)
[»] chr4 (2 HSPs)
chr4 (275-384)||(25034031-25034139)
chr4 (301-384)||(25028621-25028704)
[»] chr8 (1 HSPs)
chr8 (203-251)||(19178569-19178617)
[»] chr6 (1 HSPs)
chr6 (304-346)||(2947903-2947945)
[»] chr3 (1 HSPs)
chr3 (304-393)||(9009491-9009580)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 211 - 472
Target Start/End: Original strand, 9805184 - 9805445
Alignment:
Q  211 taatgttgttggataattgaatacttacaatttgtacaataatttaatacctacttttatgtcgttgaaaatacatatggtatacaaatataagttatca 310  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9805184 taatgttgttggataattgaatacttacaatttgtataataattgaatacctacttttatgtcgttgaaaatacatatggtatacaaatataagttatca 9805283  T
Q  311 taaaattgaaattcctccatccaagatttagtaatactagcacagacaacgtccagcatattcttcatcacataatgttcacagtcaatcccattaggtt 410  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9805284 taaaactgaaattcctccatccaagatttagtaatactagcacagacaacgtccagcatattcttcatcacataatgttcacagtcaatcccattaggtt 9805383  T
Q  411 gcatctgtgcctacaaatgaacggtattcttatatagtcggtgcaagagttataaattatag 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9805384 gcatctgtgcctacaaatgaacggtattcttatatagtcggtgcaagagttataaattatag 9805445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 5 - 182
Target Start/End: Original strand, 9805001 - 9805180
Alignment:
Q  5 acagctagctccatcagcataacacnnnnnnntccagaaaaacatagcttgacaagaaataatcatacacaagtgaattgttcaacaaatctcatagaaa 104  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  9805001 acagctagctccatcagcataacacaaaaaaatccagaaaaacatagcttgacaagaaataatcatacacaagtgaattgttcagcaaacctcatagaaa 9805100  T
Q  105 ttatcacataaacaaggaaagaaacaa--atagatcacttaacatcgtaacaataaagcatacaagataaatcctaagtt 182  Q
    |||||| |||||||||| |||||||||  |||||||||||||||| | |||||||||||||||||||| |||||||||||    
T  9805101 ttatcagataaacaagggaagaaacaaatatagatcacttaacattgaaacaataaagcatacaagatgaatcctaagtt 9805180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 7688837 - 7688945
Alignment:
Q  304 gttatcataaaattgaaattcctccatccaagatttagtaatactagcacagacaacgtccagcatattcttcatcacataatgttcacagtcaatccca 403  Q
    |||||||||||||| |||| ||||||||||||| ||||||||| ||||| |||  |  || |||||||||||||||||||| | | |||| ||| | |||    
T  7688837 gttatcataaaattaaaatacctccatccaagacttagtaatattagcagagatgatatctagcatattcttcatcacatagtatccacaatcattgcca 7688936  T
Q  404 ttaggttgc 412  Q
    |||||||||    
T  7688937 ttaggttgc 7688945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 434
Target Start/End: Complemental strand, 6191321 - 6191191
Alignment:
Q  304 gttatcataaaattgaaattcctccatccaagatttagtaatactagcacagacaacgtccagcatattcttcatcacataatgttcacagtcaatccca 403  Q
    |||||||||||||| |||| ||||||||||||| ||||||||| ||||| |||  |  || |||||||||||||||||||| | | |||| ||| | |||    
T  6191321 gttatcataaaattaaaatacctccatccaagacttagtaatattagcagagatgatatctagcatattcttcatcacatagtatccacaatcattgcca 6191222  T
Q  404 ttaggttgcatctgtgcctacaaatgaacgg 434  Q
    ||||||||| |   || ||||||||||||||    
T  6191221 ttaggttgctttcttggctacaaatgaacgg 6191191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 21873599 - 21873707
Alignment:
Q  304 gttatcataaaattgaaattcctccatccaagatttagtaatactagcacagacaacgtccagcatattcttcatcacataatgttcacagtcaatccca 403  Q
    |||||||||||||| |||| ||||||||||||| ||||||||| ||||| |||  |  || |||||||||||||||||||| | | |||| ||| | |||    
T  21873599 gttatcataaaattaaaatacctccatccaagacttagtaatattagcagagatgatatctagcatattcttcatcacatagtatccacaatcattgcca 21873698  T
Q  404 ttaggttgc 412  Q
    |||||||||    
T  21873699 ttaggttgc 21873707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 484264 - 484372
Alignment:
Q  304 gttatcataaaattgaaattcctccatccaagatttagtaatactagcacagacaacgtccagcatattcttcatcacataatgttcacagtcaatccca 403  Q
    |||||||||||||| |||| ||||||||||||| ||||||||| ||||| |||  |  || |||||||||||||||||||| | | |||| ||| | |||    
T  484264 gttatcataaaattaaaatacctccatccaagacttagtaatattagcagagatgatatctagcatattcttcatcacatagtatccacaatcattgcca 484363  T
Q  404 ttaggttgc 412  Q
    |||||||||    
T  484364 ttaggttgc 484372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 412
Target Start/End: Complemental strand, 16434696 - 16434588
Alignment:
Q  304 gttatcataaaattgaaattcctccatccaagatttagtaatactagcacagacaacgtccagcatattcttcatcacataatgttcacagtcaatccca 403  Q
    |||||||||||||| |||| ||||||||||||| ||||||||| ||||| |||  |  || |||||||||||||||||||| | | |||| ||| | |||    
T  16434696 gttatcataaaattaaaatacctccatccaagacttagtaatattagcagagatgatatctagcatattcttcatcacatagtatccacaatcattgcca 16434597  T
Q  404 ttaggttgc 412  Q
    |||||||||    
T  16434596 ttaggttgc 16434588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 33260576 - 33260684
Alignment:
Q  304 gttatcataaaattgaaattcctccatccaagatttagtaatactagcacagacaacgtccagcatattcttcatcacataatgttcacagtcaatccca 403  Q
    |||||||||||||| |||| ||||||||||||| ||||||||| ||||| |||  |  || |||||||||||||||||||| | | |||| ||| | |||    
T  33260576 gttatcataaaattaaaatacctccatccaagacttagtaatattagcagagatgatatctagcatattcttcatcacatagtatccacaatcattgcca 33260675  T
Q  404 ttaggttgc 412  Q
    |||||||||    
T  33260676 ttaggttgc 33260684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 31560587 - 31560534
Alignment:
Q  198 actcttcttctgttaatgttgttggataattgaatacttacaatttgtacaata 251  Q
    |||| ||||||||||||||| ||| || ||||||||| ||||||||||||||||    
T  31560587 actcatcttctgttaatgttattgtatcattgaatacctacaatttgtacaata 31560534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 78805 - 78913
Alignment:
Q  304 gttatcataaaattgaaattcctccatccaagatttagtaatactagcacagacaacgtccagcatattcttcatcacataatgttcacagtcaatccca 403  Q
    |||||||||||||| |||| ||||||||||||| ||||||||| ||||| |||  |  || | |||||||||||||||||| | | |||| ||| | |||    
T  78805 gttatcataaaattaaaatacctccatccaagacttagtaatattagcagagatgatatctaacatattcttcatcacatagtatccacaatcattgcca 78904  T
Q  404 ttaggttgc 412  Q
    |||||||||    
T  78905 ttaggttgc 78913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 384
Target Start/End: Complemental strand, 25034139 - 25034031
Alignment:
Q  275 ttgaaaatacatatggtatacaaatataagttatcataaaattgaaattcctccatccaagatttagtaatactagcacagacaacgtccagcatattct 374  Q
    |||| ||||||||| ||||| | || ||||||||||||||||| |||| ||||||||||||| ||||||||  ||||| ||| ||  || |  |||||||    
T  25034139 ttgacaatacatatagtataaacat-taagttatcataaaattaaaatacctccatccaagacttagtaatgttagcagagataatatctactatattct 25034041  T
Q  375 tcatcacata 384  Q
    ||||||||||    
T  25034040 tcatcacata 25034031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 384
Target Start/End: Original strand, 25028621 - 25028704
Alignment:
Q  301 taagttatcataaaattgaaattcctccatccaagatttagtaatactagcacagacaacgtccagcatattcttcatcacata 384  Q
    ||||||||||||||||| |||| ||||||||||||| ||||  ||  ||||| ||| ||  || || |||||||||||||||||    
T  25028621 taagttatcataaaattaaaatacctccatccaagacttagcgatgttagcagagataatatctagtatattcttcatcacata 25028704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 19178569 - 19178617
Alignment:
Q  203 tcttctgttaatgttgttggataattgaatacttacaatttgtacaata 251  Q
    ||||||||||||||||||| || ||||||||| |||| |||||||||||    
T  19178569 tcttctgttaatgttgttgtatcattgaatacctacagtttgtacaata 19178617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 2947903 - 2947945
Alignment:
Q  304 gttatcataaaattgaaattcctccatccaagatttagtaata 346  Q
    |||||||||||||| |||| ||||||||||||| |||||||||    
T  2947903 gttatcataaaattaaaatacctccatccaagacttagtaata 2947945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 393
Target Start/End: Original strand, 9009491 - 9009580
Alignment:
Q  304 gttatcataaaattgaaattcctccatccaagatttagtaatactagcacagacaacgtccagcatattcttcatcacataatgttcaca 393  Q
    ||||| |||||||| |||| |||||||| |||| ||||||||| ||||| |||  |  || ||||| |||||||||||||| | ||||||    
T  9009491 gttattataaaattaaaatacctccatctaagacttagtaatattagcagagatgatatctagcattttcttcatcacatagtattcaca 9009580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University