View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4827-Insertion-9 (Length: 293)
Name: NF4827-Insertion-9
Description: NF4827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4827-Insertion-9 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 109 - 293
Target Start/End: Complemental strand, 33009596 - 33009415
Alignment:
| Q |
109 |
aattaacaatgtagttggttgatttttgcattgaatttgtacaaaagcaatgaaaggaaagttgaaacaacatagagatagatatgttgggattatactt |
208 |
Q |
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| T |
33009596 |
aattaacaatgtagttggttgatttttgcattgaatttgtacaaaagcaatgaaaggaaagttgaaacaacatagcgatagatatgttgggattatactt |
33009497 |
T |
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| Q |
209 |
ccttaaccactgtctaacattctcccgattgattatataattttaggttttgtattataccttcgcatgtctctcttcgtatgtt |
293 |
Q |
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| T |
33009496 |
cctta---actgtctaacattctcctgattgattatataattataggttttgtattataccttcccatatctctctctgtatgtt |
33009415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 33009746 - 33009671
Alignment:
| Q |
8 |
aaaggggtgttccaaaacacataaaaggtaagtattttgagttaggagtattcatatggtcttgtgtgctatcgatg |
84 |
Q |
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| T |
33009746 |
aaagggatgttccaaaacacatcaaaggtaagtattttgagtta-gagtattcatatggtcttgtgtgctatcgatg |
33009671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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