View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4827_high_1 (Length: 360)

Name: NF4827_high_1
Description: NF4827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4827_high_1
NF4827_high_1
[»] chr5 (10 HSPs)
chr5 (1-347)||(227625-227971)
chr5 (2-205)||(8938850-8939053)
chr5 (11-238)||(4477105-4477330)
chr5 (4-180)||(16621173-16621345)
chr5 (8-84)||(7449851-7449927)
chr5 (115-163)||(26348140-26348188)
chr5 (116-179)||(25537371-25537434)
chr5 (3-82)||(30827131-30827209)
chr5 (115-181)||(27083298-27083364)
chr5 (4-40)||(29278988-29279024)
[»] chr1 (13 HSPs)
chr1 (1-239)||(8018855-8019091)
chr1 (4-187)||(43344397-43344575)
chr1 (29-222)||(18246066-18246257)
chr1 (87-179)||(14255063-14255155)
chr1 (115-190)||(16050349-16050424)
chr1 (12-150)||(2612623-2612759)
chr1 (115-182)||(16030358-16030425)
chr1 (115-190)||(52565535-52565610)
chr1 (115-190)||(4601548-4601623)
chr1 (117-203)||(5459771-5459857)
chr1 (27-176)||(26977709-26977857)
chr1 (115-176)||(33101568-33101629)
chr1 (115-187)||(48637508-48637581)
[»] scaffold0034 (1 HSPs)
scaffold0034 (7-238)||(18425-18654)
[»] chr2 (19 HSPs)
chr2 (28-203)||(45714937-45715111)
chr2 (27-185)||(45258126-45258283)
chr2 (28-193)||(12127638-12127802)
chr2 (8-84)||(17672032-17672107)
chr2 (121-193)||(19919133-19919205)
chr2 (22-177)||(36267466-36267620)
chr2 (117-203)||(17671915-17672001)
chr2 (8-84)||(17626960-17627035)
chr2 (8-84)||(17658020-17658095)
chr2 (1-40)||(23257885-23257924)
chr2 (115-190)||(27846580-27846655)
chr2 (115-173)||(15825126-15825184)
chr2 (4-180)||(12168937-12169114)
chr2 (115-163)||(17560745-17560793)
chr2 (117-181)||(17626865-17626929)
chr2 (30-138)||(24499796-24499903)
chr2 (12-84)||(27933704-27933776)
chr2 (115-179)||(29710984-29711048)
chr2 (30-82)||(44941996-44942047)
[»] chr4 (9 HSPs)
chr4 (31-177)||(12683753-12683898)
chr4 (2-100)||(10981911-10982006)
chr4 (27-145)||(47253277-47253394)
chr4 (166-229)||(15789976-15790039)
chr4 (10-84)||(17121604-17121678)
chr4 (115-171)||(15514622-15514678)
chr4 (10-208)||(19809639-19809835)
chr4 (3-53)||(3982729-3982779)
chr4 (115-177)||(15742214-15742276)
[»] chr3 (9 HSPs)
chr3 (117-193)||(2311897-2311973)
chr3 (115-190)||(8122975-8123050)
chr3 (115-182)||(21649376-21649443)
chr3 (115-221)||(1475673-1475779)
chr3 (115-184)||(13085134-13085203)
chr3 (127-184)||(14860172-14860229)
chr3 (113-145)||(10896103-10896135)
chr3 (115-182)||(35314183-35314251)
chr3 (113-149)||(49631519-49631555)
[»] chr8 (5 HSPs)
chr8 (4-204)||(30477582-30477782)
chr8 (127-190)||(20055534-20055597)
chr8 (87-182)||(15057998-15058093)
chr8 (127-193)||(23269198-23269264)
chr8 (27-150)||(21416733-21416855)
[»] chr7 (9 HSPs)
chr7 (10-202)||(9573384-9573574)
chr7 (115-179)||(13292184-13292248)
chr7 (113-218)||(2226570-2226675)
chr7 (115-176)||(21161211-21161271)
chr7 (1-93)||(12004728-12004820)
chr7 (27-142)||(9135335-9135449)
chr7 (87-168)||(34854220-34854301)
chr7 (27-176)||(39879356-39879505)
chr7 (115-163)||(5925536-5925584)
[»] chr6 (14 HSPs)
chr6 (115-208)||(30680929-30681022)
chr6 (27-163)||(9291994-9292128)
chr6 (9-73)||(15104236-15104299)
chr6 (157-229)||(22692019-22692091)
chr6 (115-182)||(16343542-16343609)
chr6 (115-190)||(31125224-31125299)
chr6 (3-72)||(8006905-8006974)
chr6 (30-146)||(9277278-9277392)
chr6 (115-176)||(12449644-12449705)
chr6 (11-91)||(17703689-17703769)
chr6 (8-84)||(22692152-22692228)
chr6 (4-86)||(10926845-10926927)
chr6 (115-177)||(12488057-12488119)
chr6 (115-179)||(19730652-19730715)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-84)||(69174-69256)
[»] scaffold0101 (1 HSPs)
scaffold0101 (127-176)||(10791-10840)
[»] scaffold0505 (1 HSPs)
scaffold0505 (87-182)||(7848-7943)
[»] scaffold0013 (1 HSPs)
scaffold0013 (115-165)||(4485-4535)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-73)||(149217-149289)


Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 227625 - 227971
Alignment:
Q  1 acggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  227625 acggaggcggttattctcacacacggctatataagggtgagatagcttctcccctaaagtatgattcatttttcctacactttttatatacactctttct 227724  T
Q  101 taatttcaatggtaacttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccggagcaacttccg 200  Q
     | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  227725 cagtttcaatggtaacttgagcgtttgagtgctaacgtgcctgcagacactcttcatcccaccacgaagactcatcgccaccataccggagcatcttccg 227824  T
Q  201 ccaccgttacttccatcagttcttcaccgaacacatcacaatcaatcaatgatttgtcacatttttatattaattatttttggtacatcattttatatca 300  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  227825 ccaccgttacttccatcagttcttcaccgaacatatcacaatcaatcaatgatttgtcacatttttatattaattatttttggtacatcattttatatca 227924  T
Q  301 atttgtttaaatcaattcaaatgttaaataaattttacttacgagaa 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  227925 atttgtttaaatcaattcaaatgttaaataaattttacttacgagaa 227971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 2 - 205
Target Start/End: Complemental strand, 8939053 - 8938850
Alignment:
Q  2 cggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttctt 101  Q
    ||||||| ||||||||||||||   |||||||| |||||  |||||||||||  || |||||||||| |||||| ||||||||  ||||||||||||||     
T  8939053 cggaggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttcccacactttt--tacacactctttctc 8938956  T
Q  102 aatttcaatggtaacttgagcgtttgagtgctaacgtgcctgcagacactcttcattccac--cacgaagactcatcgccaccataccggagcaacttcc 199  Q
    | || ||||  | ||| |||| || ||||| |||||||||||||  |||  ||| ||| ||  ||| |||||||||||||||| |||| |||||  ||||    
T  8938955 agttccaatactgactagagcattggagtgttaacgtgcctgcatgcacctttcgttctaccgcacaaagactcatcgccaccgtaccagagcactttcc 8938856  T
Q  200 gccacc 205  Q
    ||||||    
T  8938855 gccacc 8938850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 4477330 - 4477105
Alignment:
Q  11 ttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttcttaatttcaat 110  Q
    ||||||||||||| | ||||||||||||||  |||||||||||| || ||  |||||| || ||| |||||||| |  |||| ||  ||| | || | ||    
T  4477330 ttattctcacacatgcctatataagggtgacttagcttcacccccaaggtccgattcacttctcccacacttttca--cacattccatctcatttaccat 4477233  T
Q  111 ggtaacttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccggagcaacttccgccaccgttac 210  Q
      | ||||||||||| ||||  |||||||||||| | ||| |||| | ||||| | |||||||||||||||| ||||||||||  |||| |||||| | |    
T  4477232 actgacttgagcgttggagtattaacgtgcctgcgggcacccttcgtcccaccgcaaagactcatcgccaccgtaccggagcactttccaccaccgatgc 4477133  T
Q  211 ttccatcagttcttcaccgaacacatca 238  Q
     ||||||||||| |||||| ||| ||||    
T  4477132 ctccatcagttcctcaccggacagatca 4477105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 180
Target Start/End: Complemental strand, 16621345 - 16621173
Alignment:
Q  4 gaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttcttaa 103  Q
    ||||| |||| ||||||||||   |||||||| |||||||| ||||||||| || |||||||||| |||| | ||| ||||    |||||||||||| |     
T  16621345 gaggcagttactctcacacacacttatataagagtgagataacttcacccccaaggtatgattcactttttccacaatttt----cacactctttctcag 16621250  T
Q  104 tttcaatggtaacttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgcca 180  Q
    || ||||  |  ||||||||||  |||| |||||||||| || ||||  ||| |||||||  |||||||||||||||    
T  16621249 ttccaatattggcttgagcgttgaagtgttaacgtgcctacatacacctttcgttccaccgtgaagactcatcgcca 16621173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 7449927 - 7449851
Alignment:
Q  8 cggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttt 84  Q
    ||||||||||||||||||  |||||||||||||  |||||||||| || | |||||||||| |||||| ||| ||||    
T  7449927 cggttattctcacacacgcatatataagggtgacttagcttcacctctgatgtatgattcacttttcccacattttt 7449851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 26348140 - 26348188
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccacc 163  Q
    ||||||||||| ||||||||||||||||||||||||  ||| |||||||    
T  26348140 acttgagcgttggagtgctaacgtgcctgcagacacctttcgttccacc 26348188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 25537434 - 25537371
Alignment:
Q  116 cttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgcc 179  Q
    |||||||||| |||||||||||||| ||||| |||  ||| ||||||| ||||||||| |||||    
T  25537434 cttgagcgttggagtgctaacgtgcttgcaggcacctttcgttccaccgcgaagactcttcgcc 25537371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 30827209 - 30827131
Alignment:
Q  3 ggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactt 82  Q
    ||||||| || |||||||| ||| |||||||||||  |  |||||||||||| || |||||||||| |||||||||||||    
T  30827209 ggaggcgattgttctcacagacgcctatataagggcaacttagcttcacccc-aaggtatgattcacttttcctacactt 30827131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 27083298 - 27083364
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccac 181  Q
    ||||||| ||| ||||||||||||| ||||||||||  ||| ||| ||| ||||||||| |||||||    
T  27083298 acttgagtgttggagtgctaacgtgtctgcagacacatttcgttctaccgcgaagactcttcgccac 27083364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 29278988 - 29279024
Alignment:
Q  4 gaggcggttattctcacacacggctatataagggtga 40  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  29278988 gaggcggttattctcagacacgcctatataagggtga 29279024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 8019091 - 8018855
Alignment:
Q  1 acggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttct 100  Q
    |||||| |||||||||||||||||| |||||||||||||| ||||||||||||| || |||||||||| ||||||   ||||||  | |||| ||  |||    
T  8019091 acggagacggttattctcacacacgcctatataagggtgacatagcttcacccccaaggtatgattcacttttcccctactttt--tgcacattccatct 8018994  T
Q  101 taatttcaatggtaacttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccggagcaacttccg 200  Q
     | || | ||  | ||||||||||   |||||||||||||||| ||| ||  ||| | |||||||||||||||||||||||| ||||||||||  ||||     
T  8018993 catttcccatactgacttgagcgtcgtagtgctaacgtgcctgtagatacctttcgtcccaccacgaagactcatcgccaccgtaccggagcactttcca 8018894  T
Q  201 ccaccgttacttccatcagttcttcaccgaacacatcac 239  Q
    ||| |||| | | ||||| ||| |||||| ||| |||||    
T  8018893 ccaacgttgccttcatcaattcctcaccggacatatcac 8018855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 187
Target Start/End: Original strand, 43344397 - 43344575
Alignment:
Q  4 gaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttcttaa 103  Q
    ||||| ||||||||||||||    |||||||||||||| || ||||||||  || |||||||||| ||||||  |||||||||  |||||||||||| |     
T  43344397 gaggcagttattctcacacattcttatataagggtgagttaacttcaccc--aatgtatgattcacttttcccccacttttta--cacactctttct-ag 43344491  T
Q  104 tttcaatggtaacttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccatacc 187  Q
    |||||||  | ||||||||||| ||||||||||||  ||||||||||  ||||| ||||| | |||||||||||||||| ||||    
T  43344492 tttcaatactgacttgagcgttcgagtgctaacgtttctgcagacacctttcatcccaccgcaaagactcatcgccaccgtacc 43344575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 29 - 222
Target Start/End: Complemental strand, 18246257 - 18246066
Alignment:
Q  29 atataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttcttaatttcaatggtaacttgagcgtttga 128  Q
    ||||||||||||  || ||||||||  || |||||| ||| |||||  |||||||||||||||  ||||||| ||||  |||  | ||||||||||| ||    
T  18246257 atataagggtgacttatcttcaccctcaaggtatgaatcacttttctcacactttttatacac--tctttctcaattctaatactcacttgagcgttgga 18246160  T
Q  129 gtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccggagcaacttccgccaccgttacttccatcagttc 222  Q
    ||| |||||||| | |||||||  ||| ||||||| | |||||||||| ||||| |||| ||| | ||||||||| |||| | |||||||||||    
T  18246159 gtgttaacgtgcttacagacacctttcgttccaccgccaagactcatcaccaccgtaccagagtatcttccgccatcgttgcctccatcagttc 18246066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 14255063 - 14255155
Alignment:
Q  87 tacacactctttcttaatttcaatggtaacttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgcc 179  Q
    |||||||||||||| | ||||| |  | ||||||||||| |||||||| ||||| ||||| ||| |||| |||||||||||||||||||||||    
T  14255063 tacacactctttctcagtttcattaatgacttgagcgttggagtgctatcgtgcttgcaggcacccttcgttccaccacgaagactcatcgcc 14255155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 16050424 - 16050349
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccgga 190  Q
    ||||||||||| ||||||||||||||||||||| ||  |||  |||||| ||||||||||||||||| ||||||||    
T  16050424 acttgagcgttggagtgctaacgtgcctgcagatacctttctatccaccgcgaagactcatcgccactataccgga 16050349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 2612623 - 2612759
Alignment:
Q  12 tattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttcttaatttcaatg 111  Q
    |||||| ||||||| ||||||||||||||| |||||||| ||  || |||||||||||||||  | | | |||| ||||||||||| || | || ||||     
T  2612623 tattcttacacacgtctatataagggtgagttagcttcatcctcaaggtatgattcattttt--tccgcattttttacacactcttcctcagttccaata 2612720  T
Q  112 gtaacttgagcgtttgagtgctaacgtgcctgcagacac 150  Q
     | |||||||||||| | | |||||||| ||||||||||    
T  2612721 ctgacttgagcgtttcaatactaacgtgtctgcagacac 2612759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 16030425 - 16030358
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccacc 182  Q
    |||||||| ||||| || ||||||||||||||||||  |||||||||||  |||||||||||||||||    
T  16030425 acttgagcatttgactgataacgtgcctgcagacacctttcattccaccgtgaagactcatcgccacc 16030358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 52565610 - 52565535
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccgga 190  Q
    ||||||||||  ||||||||||||| |||||| |||  ||| ||||| |||||| |||||||||||||||||||||    
T  52565610 acttgagcgtcagagtgctaacgtgtctgcaggcacctttcgttccatcacgaaaactcatcgccaccataccgga 52565535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 4601548 - 4601623
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccgga 190  Q
    ||||||||||  |||||||||||||||||||| |||  ||| ||||||| |||||||| |||||| |||| |||||    
T  4601548 acttgagcgtcggagtgctaacgtgcctgcagtcacctttcgttccaccgcgaagacttatcgccgccatgccgga 4601623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 5459771 - 5459857
Alignment:
Q  117 ttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccggagcaacttccgcca 203  Q
    |||| |||| |||||||||||| ||||||  |||  ||| | |||||||||||||||||||||||| |||| |||||  ||||||||    
T  5459771 ttgaacgttggagtgctaacgtacctgcatgcacctttcgtcccaccacgaagactcatcgccaccgtaccagagcacattccgcca 5459857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 26977857 - 26977709
Alignment:
Q  27 ctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactt-tttatacacactctttcttaatttcaatggtaacttgagcgtt 125  Q
    |||||||||||| | || |||||||||  || ||||||||||||||||  ||| |  ||| ||||||||||||||   || || |  | |||||||||||    
T  26977857 ctatataagggtcaaattgcttcaccctcaaggtatgattcatttttc--acaatactttctacacactctttctcggttccattactgacttgagcgtt 26977760  T
Q  126 tgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatc 176  Q
     |||||||||||||||||||| |||  ||| ||||||| | |||| |||||    
T  26977759 ggagtgctaacgtgcctgcaggcacctttcgttccaccgcaaagattcatc 26977709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 33101568 - 33101629
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatc 176  Q
    ||||||||||| |||||||||||||||||||  |||  ||||||| ||  ||||||||||||    
T  33101568 acttgagcgttggagtgctaacgtgcctgcatgcacctttcattctacagcgaagactcatc 33101629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 48637581 - 48637508
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccac-gaagactcatcgccaccatacc 187  Q
    ||||||||||  ||||||| |||||||||||| |||  ||| ||| ||| | ||||||||||||||||||||||    
T  48637581 acttgagcgtcagagtgctgacgtgcctgcaggcacctttcgttctaccgcagaagactcatcgccaccatacc 48637508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 18425 - 18654
Alignment:
Q  7 gcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttcttaattt 106  Q
    ||||||||||||||||||  ||||||||||||||  |||||||| ||| || ||||||||||||||| ||||||  ||| ||||||||| |||||| |      
T  18425 gcggttattctcacacacacctatataagggtgacttagcttcaacccgaaggtatgattcattttttctacac--tttgtacacactccttcttattcc 18522  T
Q  107 caatggtaacttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccggagcaacttccgccaccg 206  Q
    | ||  | ||||||| ||| ||||||||| ||| ||||||  ||  ||| || ||||  ||||||||||||||||| ||||||||||  ||| ||||| |    
T  18523 ctatactgacttgagtgttggagtgctaaagtgtctgcaggaacatttcgtttcaccgtgaagactcatcgccaccgtaccggagcactttctgccactg 18622  T
Q  207 ttacttccatcagttcttcaccgaacacatca 238  Q
    ||   |||||| |||| |||||||||| ||||    
T  18623 ttgtctccatcggttcctcaccgaacaaatca 18654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 45715111 - 45714937
Alignment:
Q  28 tatataagggtgagatagcttcacccctaaagtatgattcatttttc-ctacactttttatacacactctttcttaatttcaatggtaacttgagcgttt 126  Q
    |||| ||||||||  ||||||||||   || |||||||||| ||||| | ||||||||||  |||||||||||| | ||||| |  | |||||||||||     
T  45715111 tatacaagggtgacttagcttcaccttcaaggtatgattcaattttcaccacacttttta--cacactctttctcagtttcattactgacttgagcgttg 45715014  T
Q  127 gagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccggagcaacttccgcca 203  Q
    |||||||||||||||||||  |||  ||| |||||||| |||||||||||||||   ||||||||||  ||||||||    
T  45715013 gagtgctaacgtgcctgcatgcacctttcgttccaccaggaagactcatcgccaatgtaccggagcactttccgcca 45714937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 45258126 - 45258283
Alignment:
Q  27 ctatataagggtgagatagcttcacccctaaagtatgattcatttttc-ctacactttttatacacactctttcttaatttcaatggtaacttgagcgtt 125  Q
    ||||||||||||||  | |||||||||  || |||||||||| ||||| | |||||||  |  |||| ||||||||| ||||| |  | |||||||| ||    
T  45258126 ctatataagggtgactttgcttcaccctcaaggtatgattcacttttcacaacactttcga--cacattctttcttagtttcattacttacttgagcttt 45258223  T
Q  126 tgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccata 185  Q
     ||||| |||||||||||||||||   ||| ||||||| |||||||||||||||||||||    
T  45258224 ggagtgttaacgtgcctgcagacatctttcgttccaccgcgaagactcatcgccaccata 45258283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 193
Target Start/End: Original strand, 12127638 - 12127802
Alignment:
Q  28 tatataagggtgagatagcttcacccctaaagtatgattcatttttc-ctacactttttatacacactctttcttaatttcaatggtaacttgagcgttt 126  Q
    ||||||||| ||| || |||||||| | ||||||||||||| ||||| | ||||||| || ||||||   |||||| ||||| |  | |||||||||||     
T  12127638 tatataaggttgacattgcttcaccaccaaagtatgattcacttttcacaacactttctacacacacg--ttcttagtttcattactgacttgagcgttg 12127735  T
Q  127 gagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccggagca 193  Q
    ||||||||||||||||||||  ||  ||| | ||||| ||||||| |||| ||||| ||||| ||||    
T  12127736 gagtgctaacgtgcctgcaggtacctttcgtcccaccgcgaagacccatcaccaccgtaccgaagca 12127802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 17672107 - 17672032
Alignment:
Q  8 cggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttt 84  Q
    |||||||||||| ||||| |||| |||||||||  |||||||||||| || |||||||||| |||||| ||||||||    
T  17672107 cggttattctcatacacgcctatttaagggtgacttagcttcacccc-aaggtatgattcacttttcccacactttt 17672032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 19919133 - 19919205
Alignment:
Q  121 gcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccggagca 193  Q
    ||||| |||| |||| || ||||||| |||  ||| |||||||||||||||| ||||||||||||||||||||    
T  19919133 gcgttagagttctaatgttcctgcaggcacctttcgttccaccacgaagactgatcgccaccataccggagca 19919205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 36267620 - 36267466
Alignment:
Q  22 cacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttcttaatttcaatggtaacttgag 121  Q
    |||| ||||||||||||||  | |||||||||  || |||||||||| |||||  | ||  ||| |||||||||||||| | ||||| |  | |||||||    
T  36267620 cacgtctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcaca-accctttctacacactctttctcagtttcattactgacttgag 36267522  T
Q  122 cgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcg 177  Q
    |||| ||||| |||| ||| ||||| |||  ||||||||||  |||||||||||||    
T  36267521 cgttggagtgttaacatgcatgcaggcacctttcattccactgcgaagactcatcg 36267466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 17672001 - 17671915
Alignment:
Q  117 ttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccggagcaacttccgcca 203  Q
    |||||| || ||| ||||||||| ||||||||||  ||| |||||||| ||||||||||||||||  |||| |||||  ||||||||    
T  17672001 ttgagcattggagcgctaacgtgtctgcagacacctttcgttccaccatgaagactcatcgccactgtaccagagcactttccgcca 17671915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 17627035 - 17626960
Alignment:
Q  8 cggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttt 84  Q
    |||||||||||| ||||| |||| |||||||||  |||||||||||| || |||||||||| |||| | ||||||||    
T  17627035 cggttattctcatacacgcctatttaagggtgacttagcttcacccc-aaggtatgattcactttttccacactttt 17626960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 17658095 - 17658020
Alignment:
Q  8 cggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttt 84  Q
    |||||||||||| ||||| |||| |||||||||  |||||||||||| || |||||||||| ||||||  |||||||    
T  17658095 cggttattctcatacacgcctatttaagggtgacttagcttcacccc-aaggtatgattcacttttcccgcactttt 17658020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23257924 - 23257885
Alignment:
Q  1 acggaggcggttattctcacacacggctatataagggtga 40  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  23257924 acggagacggttattctcacacacgcctatataagggtga 23257885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 27846580 - 27846655
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccgga 190  Q
    |||||| |||| |||||||||||||||||||| |||| ||| | | ||  ||||||||||| |||||| |||||||    
T  27846580 acttgatcgttggagtgctaacgtgcctgcaggcacttttcgtccaactgcgaagactcattgccaccgtaccgga 27846655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 15825184 - 15825126
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactc 173  Q
    ||||||||||   |||||||||||||||||||||||  ||| ||||||||| |||||||    
T  15825184 acttgagcgtcaaagtgctaacgtgcctgcagacacatttcgttccaccacaaagactc 15825126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 180
Target Start/End: Complemental strand, 12169114 - 12168937
Alignment:
Q  4 gaggcggttattctca-cacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttc-ctacactttttatacacactctttctt 101  Q
    |||||||||||||||| | | || |||| ||||||||  || |||||||||  || |||| ||||| ||||| | ||||||| ||  |||||||||||||    
T  12169114 gaggcggttattctcaacgcgcgcctatttaagggtggcattgcttcaccctcaaggtataattcacttttcacaacactttcta--cacactctttctt 12169017  T
Q  102 aatttcaatggtaacttga-gcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgcca 180  Q
    | || || |  | |||||| ||||| ||||| ||| ||||||||||||||  ||| ||||||| | |||||| |||||||    
T  12169016 agttccattactgacttgaagcgttggagtgttaatgtgcctgcagacacctttcgttccaccgcaaagacttatcgcca 12168937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 17560793 - 17560745
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccacc 163  Q
    ||||||||||| |  ||||||||||||||||||||| ||||||| ||||    
T  17560793 acttgagcgttgggctgctaacgtgcctgcagacacccttcatttcacc 17560745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 17626929 - 17626865
Alignment:
Q  117 ttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccac 181  Q
    |||||| || ||| ||||||||| ||||||||||  ||| ||||||||  |||||||||||||||    
T  17626929 ttgagcattggagagctaacgtgtctgcagacacctttcgttccaccataaagactcatcgccac 17626865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 24499903 - 24499796
Alignment:
Q  30 tataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttcttaatttcaatggtaacttgagcgtttgag 129  Q
    |||||||||||  | ||||||||| ||| |||||||||| |||||  | || |||| |||||||||||||| | || || |  | ||||||||||| |||    
T  24499903 tataagggtgaacttgcttcacccttaaggtatgattcacttttcaca-acattttctacacactctttctcatttccattactgacttgagcgttggag 24499805  T
Q  130 tgctaacgt 138  Q
    |||||||||    
T  24499804 tgctaacgt 24499796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 27933704 - 27933776
Alignment:
Q  12 tattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttt 84  Q
    |||||||||||||| |||||||| ||| |  || ||||||| | || |||||||||| |||||| ||||||||    
T  27933704 tattctcacacacgtctatataaaggtaacttaacttcacctccaaggtatgattcacttttcccacactttt 27933776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 29711048 - 29710984
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgcc 179  Q
    ||||||||||| |||||||||||||| |||| ||||  ||  ||||||| ||||||| |||||||    
T  29711048 acttgagcgttggagtgctaacgtgcatgcatacaccttttgttccaccgcgaagacgcatcgcc 29710984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 44942047 - 44941996
Alignment:
Q  30 tataagggtgagatagcttcacccctaaagtatgattcatttttcctacactt 82  Q
    |||||||||||  |||||||||||| ||||||||||||  |||||||||||||    
T  44942047 tataagggtgacttagcttcacccc-aaagtatgattcgcttttcctacactt 44941996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 31 - 177
Target Start/End: Complemental strand, 12683898 - 12683753
Alignment:
Q  31 ataagggtgagatagcttcacccctaaagtatgattcatttttc-ctacactttttatacacactctttcttaatttcaatggtaacttgagcgtttgag 129  Q
    ||||||||||  | ||||||||| ||| |||||||||| ||||| | ||||||| ||  |||||||||||| | ||||| |  ||||||||||||| |||    
T  12683898 ataagggtgaacttgcttcacccttaaggtatgattcacttttcacaacactttcta--cacactctttctcagtttcattactaacttgagcgttggag 12683801  T
Q  130 tgctaacgtgcctgcagacactcttcattccaccacgaagactcatcg 177  Q
    ||||||||||||||||| |||  ||| ||||||| | |||||||||||    
T  12683800 tgctaacgtgcctgcaggcacctttcgttccaccgcaaagactcatcg 12683753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 10982006 - 10981911
Alignment:
Q  2 cggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttct 100  Q
    |||||||||||||||||||||||| ||||||||||||||  ||| ||| |||| || |||||||||| |||||| ||||||||  ||||||||||||||    
T  10982006 cggaggcggttattctcacacacgtctatataagggtgacttagtttctcccc-aatgtatgattcacttttcccacactttt--tacacactctttct 10981911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 47253394 - 47253277
Alignment:
Q  27 ctatataagggtgagatagcttcacccctaaagtatgattcatttttc-ctacactttttatacacactctttcttaatttcaatggtaacttgagcgtt 125  Q
    ||||||||||||||  |||||||||||  || |||||||||| ||||| | ||||||||  |||||||||||||| | || || |  | |||||||||||    
T  47253394 ctatataagggtgacttagcttcaccctcaaggtatgattcacttttcacaacactttt--tacacactctttctcagttccattactgacttgagcgtt 47253297  T
Q  126 tgagtgctaacgtgcctgca 145  Q
     |||||||||| ||||||||    
T  47253296 ggagtgctaacatgcctgca 47253277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 15790039 - 15789976
Alignment:
Q  166 gaagactcatcgccaccataccggagcaacttccgccaccgttacttccatcagttcttcaccg 229  Q
    |||||||| ||||||||||||||||||| |||| |||||| || | ||||||||||| ||||||    
T  15790039 gaagactcgtcgccaccataccggagcaccttctgccaccattgcctccatcagttcatcaccg 15789976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 17121604 - 17121678
Alignment:
Q  10 gttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttt 84  Q
    ||||||| |||||||| ||||||||||||||  || ||||||||| || |||| ||||| |||||| ||||||||    
T  17121604 gttattcacacacacgtctatataagggtgatttaacttcacccccaaggtattattcacttttcccacactttt 17121678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 15514622 - 15514678
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagac 171  Q
    ||||||||||| |||||||||||||||| ||| ||| |||| ||||||| |||||||    
T  15514622 acttgagcgttggagtgctaacgtgcctacaggcacccttcgttccaccgcgaagac 15514678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 19809835 - 19809639
Alignment:
Q  10 gttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttc-ctacactttttatacacactctttcttaatttca 108  Q
    ||||||||||| | || |||| |||||||||  ||| |||||||  || |||| ||||| ||||| | ||||||| ||  |||||||||||||| |||||    
T  19809835 gttattctcacgcgcgcctatgtaagggtgacttagtttcaccctcaaggtataattcacttttcacaacactttcta--cacactctttcttagtttca 19809738  T
Q  109 atggtaacttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccggagcaacttccgccaccgtt 208  Q
     |  | ||||||||||| |||||||||| || ||||||  || |||   || ||| ||||||||||||| |||| |||| |||||  |||| ||||||||    
T  19809737 ttactgacttgagcgttggagtgctaacatgtctgcaggaac-ctttcgtcaaccgcgaagactcatcgtcaccgtaccagagcacattccaccaccgtt 19809639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 3982779 - 3982729
Alignment:
Q  3 ggaggcggttattctcacacacggctatataagggtgagatagcttcaccc 53  Q
    |||||||||||||| |||||||| ||||| ||||||||  |||||||||||    
T  3982779 ggaggcggttattcccacacacgcctatagaagggtgacttagcttcaccc 3982729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 15742214 - 15742276
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcg 177  Q
    ||||||||||  ||||||||||||||| |||| |||  |||  ||||||||||||||||||||    
T  15742214 acttgagcgtaagagtgctaacgtgccagcaggcacctttcgctccaccacgaagactcatcg 15742276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 2311897 - 2311973
Alignment:
Q  117 ttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccggagca 193  Q
    ||||||||| ||||||||||||  ||||||||||  ||||||||||||||||||||| |||||||| ||||||||||    
T  2311897 ttgagcgttggagtgctaacgtatctgcagacacctttcattccaccacgaagactcttcgccaccgtaccggagca 2311973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 8122975 - 8123050
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccgga 190  Q
    ||||||||||| ||||||||||||||||||| ||||  ||||||  |||  |||||||||||| |||| |||||||    
T  8122975 acttgagcgttggagtgctaacgtgcctgcatacacctttcattttaccgtgaagactcatcgtcaccgtaccgga 8123050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 21649443 - 21649376
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccacc 182  Q
    |||||| |||| | |||||||||||| ||||| |||  ||| ||||||| ||||||||||||||||||    
T  21649443 acttgatcgttggggtgctaacgtgcttgcaggcacctttcgttccaccgcgaagactcatcgccacc 21649376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 1475779 - 1475673
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccggagcaacttccgccaccgttacttcc 214  Q
    ||||||||||| |||||||| | |||||||||||||  ||| | |||||  |||||||  |||||||| |||||||||   ||| || |||||| | |||    
T  1475779 acttgagcgttggagtgctagcatgcctgcagacacctttcgtcccaccgtgaagactattcgccaccgtaccggagcgctttctgcaaccgttgcctcc 1475680  T
Q  215 atcagtt 221  Q
    |||||||    
T  1475679 atcagtt 1475673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 13085134 - 13085203
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccat 184  Q
    ||||||||||| || |||| || ||||||||||||   ||||| ||||||||||||  ||||||||||||    
T  13085134 acttgagcgttggaatgcttacatgcctgcagacatctttcatcccaccacgaagaaccatcgccaccat 13085203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 14860172 - 14860229
Alignment:
Q  127 gagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccat 184  Q
    ||||||||| |||||||||  |||  ||| |||||||||||||| |||||||||||||    
T  14860172 gagtgctaatgtgcctgcaagcacctttcgttccaccacgaagattcatcgccaccat 14860229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 10896135 - 10896103
Alignment:
Q  113 taacttgagcgtttgagtgctaacgtgcctgca 145  Q
    ||||||||||||| |||||||||||||||||||    
T  10896135 taacttgagcgttggagtgctaacgtgcctgca 10896103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 35314183 - 35314251
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagac-tcatcgccacc 182  Q
    ||||||||||| ||||||||||||| ||||| |||| || | ||||||| |||| || |||||||||||    
T  35314183 acttgagcgttggagtgctaacgtgtctgcaaacaccctccgttccaccgcgaacacttcatcgccacc 35314251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 49631555 - 49631519
Alignment:
Q  113 taacttgagcgtttgagtgctaacgtgcctgcagaca 149  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  49631555 taacttgagcgttagagtgttaacgtgcctgcagaca 49631519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 30477782 - 30477582
Alignment:
Q  4 gaggcggttattctc-acacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttc-ctacactttttatacacactctttctt 101  Q
    ||||||||||||||| || |||| |||||||||||||| ||  ||||||||  || |||||||||| ||||| | ||||||| ||  ||||||||||||     
T  30477782 gaggcggttattctcgacgcacgcctatataagggtgacattacttcaccctcaaggtatgattcacttttcacaacactttcta--cacactctttctc 30477685  T
Q  102 aatttcaatggtaacttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccggagcaacttccgc 201  Q
    | ||||  |  | ||||||||||| |||||||||||||| ||||||||   ||| |  |||| ||||| ||||| |||||||||| ||||||  ||||||    
T  30477684 agtttcgttactgacttgagcgttggagtgctaacgtgcatgcagacatctttcgtctcaccgcgaagtctcattgccaccatactggagcactttccgc 30477585  T
Q  202 cac 204  Q
    |||    
T  30477584 cac 30477582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 20055597 - 20055534
Alignment:
Q  127 gagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccgga 190  Q
    |||| ||||||||||||||||||| |||| ||||||| |||||| |||||||| || |||||||    
T  20055597 gagtactaacgtgcctgcagacacccttcgttccaccgcgaagattcatcgccgccgtaccgga 20055534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 15058093 - 15057998
Alignment:
Q  87 tacacactctttcttaatttcaatggtaacttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccacc 182  Q
    |||||| | ||||| ||||||| |  ||||||| |||||  ||||||||||||||||||  |||  ||| ||||||||| ||||||||||| ||||    
T  15058093 tacacattttttctcaatttcattactaacttgtgcgttgtagtgctaacgtgcctgcatgcacctttcgttccaccacaaagactcatcgtcacc 15057998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 23269264 - 23269198
Alignment:
Q  127 gagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccggagca 193  Q
    |||||||||| |||||| ||||||  ||| ||||||| | |||||||||||||||| |||| |||||    
T  23269264 gagtgctaacttgcctgtagacacctttcgttccaccgcaaagactcatcgccaccgtaccagagca 23269198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 21416855 - 21416733
Alignment:
Q  27 ctatataagggtgagatagcttcacccctaaagtatgattcatttttc-ctacactttttatacacactctttcttaatttcaatggtaacttgagcgtt 125  Q
    ||||| ||||||||  | ||||||||| ||| ||| |||||||||||| | ||||||| ||  |||||||||||| | ||||| |  | ||||||||||     
T  21416855 ctatacaagggtgaacttgcttcacccttaaggtacgattcatttttcacaacactttcta--cacactctttctcagtttcattactgacttgagcgtc 21416758  T
Q  126 tgagtgctaacgtgcctgcagacac 150  Q
     ||||||||||| || |||||||||    
T  21416757 ggagtgctaacgagcatgcagacac 21416733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 9573384 - 9573574
Alignment:
Q  10 gttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttcttaatttcaa 109  Q
    |||||||| |||||   ||||||||||||||  |||||||||| | || ||||||||||| ||||| |||||| |  |||||||||||||| | || | |    
T  9573384 gttattcttacacattcctatataagggtgacttagcttcacctccaatgtatgattcatgtttcccacacttct--tacacactctttctcagttccca 9573481  T
Q  110 tggtaacttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccggagcaacttccgcc 202  Q
    |  | ||||| ||||| |||||||||||||||||||| ||| | |  ||||||| | ||||||| |||| ||| || |||||||  |||||||    
T  9573482 tattgacttgtgcgttggagtgctaacgtgcctgcaggcaccccttgttccaccgcaaagactcgtcgctaccttatcggagcactttccgcc 9573574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 13292184 - 13292248
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgcc 179  Q
    ||||||||||| |||||||||||| |||||||||||  ||| |||||||||||||||||||||||    
T  13292184 acttgagcgttagagtgctaacgtacctgcagacacctttccttccaccacgaagactcatcgcc 13292248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 2226675 - 2226570
Alignment:
Q  113 taacttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccggagcaacttccgccaccgttactt 212  Q
    ||||||||||||| ||||||||| ||||||||||||||  ||| | |||||  ||||| |||||||||| ||||| |||||  ||||||||| ||| | |    
T  2226675 taacttgagcgttggagtgctaatgtgcctgcagacacctttcgtcccaccgtgaagattcatcgccactataccagagcattttccgccactgttgcct 2226576  T
Q  213 ccatca 218  Q
    ||||||    
T  2226575 ccatca 2226570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 21161271 - 21161211
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatc 176  Q
    ||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  21161271 acttgagcgttggagtgctaacgtgcctgcagacact-ttcgttccaccgcgaagactcatc 21161211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 12004728 - 12004820
Alignment:
Q  1 acggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacac 93  Q
    ||||| || |||||||||||||||| ||||||||||||||  |||||||||| | || | |||||| | |||||| |||||||||| ||||||    
T  12004728 acggaagcagttattctcacacacgcctatataagggtgacttagcttcacctcaaagggatgattgacttttcccacactttttacacacac 12004820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 9135335 - 9135449
Alignment:
Q  27 ctatataagggtgagatagcttcacccctaaagtatgattcatttttc-ctacactttttatacacactctttcttaatttcaatggtaacttgagcgtt 125  Q
    ||||||||||||||  | |||||||||  || |||||||||| ||||| | ||| ||||||  |||||||||||| |||| || |  | |||||||||||    
T  9135335 ctatataagggtgaatttgcttcaccctcaaggtatgattcacttttcacaacagttttta--cacactctttctcaattccattactgacttgagcgtt 9135432  T
Q  126 tgagtgctaacgtgcct 142  Q
     ||||||||||||||||    
T  9135433 agagtgctaacgtgcct 9135449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 34854301 - 34854220
Alignment:
Q  87 tacacactctttcttaatttcaatggtaacttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaa 168  Q
    |||||||||||||| | ||||| |  ||||||||||||  ||||||||||||| ||||| ||||  ||| ||||||||||||    
T  34854301 tacacactctttctcagtttcattactaacttgagcgtcagagtgctaacgtgtctgcaaacaccgttcgttccaccacgaa 34854220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 39879505 - 39879356
Alignment:
Q  27 ctatataagggtgagatagcttcacccctaaagt-atgattca-tttttcctacactttttatacacactctttcttaatttcaatggtaacttgagcgt 124  Q
    |||||||||||||| || ||||| ||||| | |  |||||||| ||||| | ||||||||||  |||||||||||| | ||||| |  | ||||||||||    
T  39879505 ctatataagggtgacattgcttcccccctcatggcatgattcactttttacaacacttttta--cacactctttctcagtttcattactgacttgagcgt 39879408  T
Q  125 ttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatc 176  Q
    |  |||| ||||||| |||||| |||  ||| |||||||||||||| |||||    
T  39879407 taaagtgttaacgtgtctgcaggcacctttcgttccaccacgaagattcatc 39879356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 5925536 - 5925584
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccacc 163  Q
    |||||| |||| ||||||||||||||||||||||||  ||| |||||||    
T  5925536 acttgatcgttggagtgctaacgtgcctgcagacacctttcgttccacc 5925584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 30681022 - 30680929
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccggagcaacttccgccaccgtt 208  Q
    ||||||||||| |||||||||||||  |||||||||  ||| | ||||| |||||||||||| ||||| |||||||||| || |||||||||||    
T  30681022 acttgagcgttggagtgctaacgtgattgcagacacctttcgtcccaccgcgaagactcatctccaccttaccggagcacctcccgccaccgtt 30680929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 9291994 - 9292128
Alignment:
Q  27 ctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttcttaatttcaatggtaacttgagcgttt 126  Q
    |||||||| |||||| |||||||||||  || |||||||||| |||||| ||||||||  |||| ||| ||||| | || ||||  | |||||||||||     
T  9291994 ctatataaaggtgagttagcttcaccctcaaggtatgattcacttttcccacactttt--tacatactatttctcagttccaatactgacttgagcgtta 9292091  T
Q  127 gagtgctaacgtgcctgcagacactcttcattccacc 163  Q
    | |||||||||||| ||||| |||  ||| |||||||    
T  9292092 gcgtgctaacgtgcttgcaggcacctttcgttccacc 9292128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 15104236 - 15104299
Alignment:
Q  9 ggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcattttt 73  Q
    ||||||||||||||||| |||||||||||||   |||||||||||| ||||||||||||| ||||    
T  15104236 ggttattctcacacacgcctatataagggtggcttagcttcacccc-aaagtatgattcactttt 15104299  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 22692091 - 22692019
Alignment:
Q  157 ttccaccacgaagactcatcgccaccataccggagcaacttccgccaccgttacttccatcagttcttcaccg 229  Q
    ||||||| ||||||||||||||||||  | |||||||  |||||||||| || ||||||||||||| ||||||    
T  22692091 ttccaccgcgaagactcatcgccaccgaatcggagcactttccgccaccattgcttccatcagttcctcaccg 22692019  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 16343609 - 16343542
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccacc 182  Q
    ||||||| ||| |||||||||||||||||||| ||| ||||  |||||  ||||||||||||||||||    
T  16343609 acttgagtgttggagtgctaacgtgcctgcaggcacccttcgctccactgcgaagactcatcgccacc 16343542  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 31125299 - 31125224
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccaccataccgga 190  Q
    |||||||| || |||||||||||||||| ||  ||| |||||||||||||| |||||| |||| |||| |||||||    
T  31125299 acttgagcattggagtgctaacgtgcctacaagcacccttcattccaccacaaagactaatcgtcaccgtaccgga 31125224  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 8006905 - 8006974
Alignment:
Q  3 ggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttt 72  Q
    |||| ||||||||||| |||||||| ||| ||||||||  |||||||||||| || ||||||||| ||||    
T  8006905 ggagacggttattctctcacacggcaataaaagggtgacttagcttcacccccaatgtatgattcctttt 8006974  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 9277278 - 9277392
Alignment:
Q  30 tataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttcttaatttcaatggtaacttgagcgtttgag 129  Q
    |||||||||||| |||||||||||  || |||||||||| |||  | ||||||||  |||| ||||||||| | || ||||  | |||||||||||  ||    
T  9277278 tataagggtgagttagcttcaccctcaaggtatgattcactttctccacactttt--tacatactctttctcagttccaatactgacttgagcgttatag 9277375  T
Q  130 tgctaacgtgcctgcag 146  Q
    |||||||||| ||||||    
T  9277376 tgctaacgtgtctgcag 9277392  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 12449644 - 12449705
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatc 176  Q
    ||||||||||  |||||||||||||||| |||||||  ||| | ||||||||||||||||||    
T  12449644 acttgagcgtcagagtgctaacgtgcctacagacacctttcgtcccaccacgaagactcatc 12449705  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 17703689 - 17703769
Alignment:
Q  11 ttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacac 91  Q
    |||||||||||| || |||||||||||||||||  |||||||| ||| ||| |||||| |||||  | |||||||| ||||    
T  17703689 ttattctcacactcgcctatataagggtgagatttcttcacccgtaaggtacgattcacttttctcatactttttacacac 17703769  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 22692228 - 22692152
Alignment:
Q  8 cggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttt 84  Q
    |||||||||||||||||  |||||||| |||||  |||||||||||  ||  ||||||||| |||||| ||||||||    
T  22692228 cggttattctcacacacacctatataaaggtgacttagcttcaccctcaagttatgattcacttttcccacactttt 22692152  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 10926845 - 10926927
Alignment:
Q  4 gaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacacttttta 86  Q
    ||||| ||||||||||| |||  |||||||||||  || |||||||||||| ||  ||| ||||| |||||| ||||||||||    
T  10926845 gaggcagttattctcacccacacctatataagggcaagttagcttcacccccaagatataattcacttttcccacacttttta 10926927  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 12488057 - 12488119
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcg 177  Q
    |||| |||||| |||||||||||||| ||||  ||| |||| |||||| ||||||||||||||    
T  12488057 acttcagcgttagagtgctaacgtgcatgcatgcacccttcgttccacaacgaagactcatcg 12488119  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 19730652 - 19730715
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgcc 179  Q
    ||||||||||| |||||||||| ||||||||  |||| ||  |||||||||||||||||| ||||    
T  19730652 acttgagcgttggagtgctaacatgcctgcatgcact-ttacttccaccacgaagactcaacgcc 19730715  T

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Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 69174 - 69256
Alignment:
Q  1 acggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttt 84  Q
    |||||| ||||||||||| |||||| |||||||||||||| ||||||||| ||| |  |||||||||| |||||| ||||||||    
T  69174 acggagacggttattctctcacacgcctatataagggtgacatagcttcagccc-agggtatgattcaattttcccacactttt 69256  T

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Target: scaffold0101 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 10791 - 10840
Alignment:
Q  127 gagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatc 176  Q
    |||||||||| ||||| |||||||  ||||||||||||||||||||||||    
T  10791 gagtgctaacatgcctacagacacctttcattccaccacgaagactcatc 10840  T

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Target: scaffold0505 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 7943 - 7848
Alignment:
Q  87 tacacactctttcttaatttcaatggtaacttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccacgaagactcatcgccacc 182  Q
    |||||||||||||| |||| || |  | | ||||||||| |||||||||||||||| ||  |||  ||| |||||||  |||||||||||||||||    
T  7943 tacacactctttctcaattgcattactgatttgagcgttagagtgctaacgtgcctacatgcacctttccttccaccgtgaagactcatcgccacc 7848  T

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Target: scaffold0013 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 4485 - 4535
Alignment:
Q  115 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaccac 165  Q
    ||||||||||| |||||||||||||| |||||||||  ||| |||||||||    
T  4485 acttgagcgttggagtgctaacgtgcttgcagacacctttcgttccaccac 4535  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 149289 - 149217
Alignment:
Q  1 acggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcattttt 73  Q
    ||||| |||||||||||  |||||  ||||||||||||||  || ||||||||| || |||||||||| ||||    
T  149289 acggaagcggttattctagcacacacctatataagggtgacttaacttcacccccaaggtatgattcactttt 149217  T

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