View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4827_high_2 (Length: 359)
Name: NF4827_high_2
Description: NF4827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4827_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 9e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 122 - 351
Target Start/End: Original strand, 19159087 - 19159316
Alignment:
| Q |
122 |
ctttatttcatgtgatcagcctcaatggtatccacagggtgcacattctctttcccgtaggaacgataattggaacgcgtatgattatgcacctgataac |
221 |
Q |
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| T |
19159087 |
ctttatttcacgtgatcaacctcaatggtatccacatggtgcatattctctttcccgtaggaacgataattggaacgcgtatgattttgcacctgataac |
19159186 |
T |
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| Q |
222 |
caccatcgcgtaggaccatggtatctctcgatcagactgcccttgcatagggaaattcatcgaaactgtgctgatcaaagaagttgttcttatcggaata |
321 |
Q |
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| T |
19159187 |
caccatcgcgcaagaccatggtatctctcgatcgtcctgcccttgcatagggaaattcatcgaaattgtgctgatcaaagaagttatccttatcggaata |
19159286 |
T |
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| Q |
322 |
atattgctgccaatctggacgtctgtggtg |
351 |
Q |
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| T |
19159287 |
atactgctgccaatctggatgtttgtggtg |
19159316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 38779154 - 38779286
Alignment:
| Q |
1 |
aggacattattaggttgattgaaccacaggacacagattgtggtggtcctccctgaaag---gtggttatcagtgactggtgagcttccaattgcttgac |
97 |
Q |
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| T |
38779154 |
aggacattgttaggttgattgaaccacaggacacagattgtggtggtcctccctgaaagaaggtggttatcagtgactggtgagcttccaattgcttgac |
38779253 |
T |
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| Q |
98 |
atgttttgttttctcatggcttctctttatttc |
130 |
Q |
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| T |
38779254 |
atgttttgttttctcatggcttctctttatttc |
38779286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 52934616 - 52934488
Alignment:
| Q |
2 |
ggacattattaggttgattgaaccacaggacacagattgtggtggtcctccctgaaaggtggtta---tcagtgactg--gtgagcttccaattgcttga |
96 |
Q |
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| T |
52934616 |
ggacattgttaggttgattgaatcacaggagactgatcgtggtgatcgtcccctaaagaaggtgacaatcagtgactgtggcgagcttccaattgcttga |
52934517 |
T |
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| Q |
97 |
catgttttgttttctcatggcttctcttt |
125 |
Q |
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| T |
52934516 |
catgttttgtcttctcatggcttctcttt |
52934488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 52942251 - 52942123
Alignment:
| Q |
2 |
ggacattattaggttgattgaaccacaggacacagattgtggtggtcctccctgaaaggtggtta---tcagtgactg--gtgagcttccaattgcttga |
96 |
Q |
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||||||| |||||||||||||| ||||||| || ||| |||||| || |||| |||| ||| | |||||||||| | |||||||||||||||||| |
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| T |
52942251 |
ggacattgttaggttgattgaatcacaggagactgatcgtggtgatcgtcccctaaagaaggtgacaatcagtgactgtggcgagcttccaattgcttga |
52942152 |
T |
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| Q |
97 |
catgttttgttttctcatggcttctcttt |
125 |
Q |
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|||||||||| |||||||||||||||||| |
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| T |
52942151 |
catgttttgtcttctcatggcttctcttt |
52942123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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