View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4827_high_4 (Length: 347)
Name: NF4827_high_4
Description: NF4827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4827_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 37019511 - 37019847
Alignment:
| Q |
11 |
cacagaccccatttccatgccactttgatggcacaggaccatatccaatgccactgaaactttcatgttccggccaaacgcctgtttcaacaacaaacat |
110 |
Q |
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| T |
37019511 |
cacagaccccatttccatgccactttgatggcactggaccatatccaatgccactgaaactttcatgttccggccaaacgcctgtttcaataacaaacat |
37019610 |
T |
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| Q |
111 |
gtcaaaatcaattttacacgtttataattaattttggaatgtggaaccatagagtatgacaaataatgtgtttttaactcatgatgtgcaacatatcatt |
210 |
Q |
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| T |
37019611 |
gtcaaaatcaattttacacgtttataattaattttggaatgtggaaccatagagtatgataaataatgtgtttttaactcatgatgtgcaacatatcatt |
37019710 |
T |
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| Q |
211 |
gaattcgatgcacacgtgaaattattttactcaccaagttcttctattttacatctagatatgtaatgtaataggaaatatttacttaannnnnnnnnnc |
310 |
Q |
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| T |
37019711 |
gaattcgatgcacacgtgaaattattttactcaccaagttcttctattttacatctagatatgtaatataataggaaatatttacttaattttttttttc |
37019810 |
T |
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| Q |
311 |
atctataaaaactaacctgaatctaaattagccatga |
347 |
Q |
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| T |
37019811 |
atctataaaaactaacctgaatctaaattagccatga |
37019847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 31303166 - 31303124
Alignment:
| Q |
104 |
caaacatgtcaaaatcaattttacacgtttataattaattttg |
146 |
Q |
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| T |
31303166 |
caaacatgtcaaaatcagttttacacatttataattaattttg |
31303124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 4080391 - 4080431
Alignment:
| Q |
103 |
acaaacatgtcaaaatcaattttacacgtttataattaatt |
143 |
Q |
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| T |
4080391 |
acaaacatgtcaaaatcaattttacacctttagaatcaatt |
4080431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 10055189 - 10055233
Alignment:
| Q |
103 |
acaaacatgtcaaaatcaattttacacgtttataattaattttgg |
147 |
Q |
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| T |
10055189 |
acaaaaatgtcaaaatcgattctacacgtttataatcaattttgg |
10055233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 30472897 - 30472857
Alignment:
| Q |
105 |
aaacatgtcaaaatcaattttacacgtttataattaatttt |
145 |
Q |
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| T |
30472897 |
aaacatgtcaaaatcaattttacatgtttagaatcaatttt |
30472857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 1232804 - 1232844
Alignment:
| Q |
107 |
acatgtcaaaatcaattttacacgtttataattaattttgg |
147 |
Q |
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| T |
1232804 |
acatttcaaaatcaattttacacgtttataatcacttttgg |
1232844 |
T |
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