View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4827_high_5 (Length: 334)
Name: NF4827_high_5
Description: NF4827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4827_high_5 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 334
Target Start/End: Original strand, 44271536 - 44271859
Alignment:
| Q |
11 |
catagaacaaactcgtcaaatgatcatcatgtttaggataataataagatggcatgtttagtttaggacaccagaattaaaaaatgatcatatgaaatac |
110 |
Q |
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| T |
44271536 |
catagaacaaactcgtcaaatgatcatcatgtttaggataataataagatggcatgtttagtttaggacaccagaattaaaaaatgatcatatgaaatac |
44271635 |
T |
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| Q |
111 |
tacaacagacagaaccaatccaaaaacgaactgataataacaaagcatcaaagccaaaataatgaaattacctgattggcaagcccccaaaacaggacag |
210 |
Q |
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| T |
44271636 |
tacaacagacagaaccaatccaaaaatgaactgataataacaaagcatcaaagccaaaataatgaaattacctgattggcaagcccccaaaacaggacag |
44271735 |
T |
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| Q |
211 |
aaatcacaacactcccccacaattcagccatgacatagaacaaacagaaactccaaatcctcataatagcaagcggaccaagaaaccgaggtccaaggat |
310 |
Q |
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| T |
44271736 |
aaatcacaacactcccccacaattcagccatgacatagaacaaacagaaactccaaatcctcataatagcaagcggaccaagaaaccgaggtccaaggat |
44271835 |
T |
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| Q |
311 |
attaagaaggttatcagcaaatgc |
334 |
Q |
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| T |
44271836 |
attaagaaggttatcagcaaatgc |
44271859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 179 - 334
Target Start/End: Complemental strand, 2808773 - 2808618
Alignment:
| Q |
179 |
tacctgattggcaagcccccaaaacaggacagaaatcacaacactcccccacaattcagccatgacatagaacaaacagaaactccaaatcctcataata |
278 |
Q |
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| T |
2808773 |
tacctgattagcaaaaccccaaaacagcacagaaacaaccacactcccccacaattcagccataacatagaacaaacagaaactccaaatccttataatt |
2808674 |
T |
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| Q |
279 |
gcaagcggaccaagaaaccgaggtccaaggatattaagaaggttatcagcaaatgc |
334 |
Q |
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| T |
2808673 |
gcaagaggaccaagaaacctaggaccaaggacattaagaagcttgtctgcaaatgc |
2808618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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