View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4827_high_6 (Length: 334)
Name: NF4827_high_6
Description: NF4827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4827_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 42769384 - 42769053
Alignment:
| Q |
1 |
tggactttacaccctcatagctccaccttagaactaattttctttggcactttcatttcaccttctggttgggttggatttggtatcaaccctacttcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769384 |
tggactttacaccctcatagctccaccttagaactaattttctttggcactttcatttcaccttctggttgggttggatttggtatcaaccctacttcac |
42769285 |
T |
|
| Q |
101 |
cacaaatgacaggaactaatgctttgatatcatttccagacccaaatacaggacaaatagttcttctacctttcatccttgacactgctgtaaaactcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42769284 |
cacaaatgacaggaactaatgctttgatatcatttccagacccaaatacaggacaaatagttcttctacctttcatccttgacactactgtaaaactcca |
42769185 |
T |
|
| Q |
201 |
aaaatcaccacttctttctcaaccctttgataatatcaacctcctctcttcctctgcagctatgtatggtggcaaaatggcaaccattcataacggtgcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769184 |
aaaatcaccacttctttctcaaccctttgataatatcaacctcctctcttcctctgcagctatgtatggtggcaaaatggcaaccattcataacggtgcg |
42769085 |
T |
|
| Q |
301 |
cctattcaaatctacgctaaactccaaactcga |
333 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |
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| T |
42769084 |
cctattcaaatctacgctaaact-caaactcga |
42769053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 2452147 - 2452457
Alignment:
| Q |
1 |
tggactttacaccctcatagctccaccttagaactaattttctttggcactttcatttcaccttctggttgggttggatttggtatcaaccctacttcac |
100 |
Q |
| |
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|||||||| ||||||||| |||||||||||||||| | |||||||| || ||||||||||||||||| |||||||||| || |||||||| |||||| |
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| T |
2452147 |
tggactttctaccctcataactccaccttagaactagtcttctttggaaccttcatttcaccttctggatgggttggatggggaatcaacccaacttcat |
2452246 |
T |
|
| Q |
101 |
cacaaatgacaggaactaatgctttgatatcatttccagacccaaatacaggacaaatagttcttctacctttcatccttgacactgctgtaaaactcca |
200 |
Q |
| |
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| | |||||||||||| |||||| ||| | ||| | ||||||| | |||| |||||||| || || |||| ||| || ||| | ||| || ||||| |
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| T |
2452247 |
cggagatgacaggaactcgtgctttaatagccttttctgacccaacttcaggccaaatagtcctacttccttacattctagacccgaatgtgaagctcca |
2452346 |
T |
|
| Q |
201 |
aaaatcaccacttctttctcaaccctttgataatatcaacctcctctcttcctctgcagctatgtatggtggcaaaatggcaaccattcataacggtgcg |
300 |
Q |
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|||||| || || || |||| || ||| | || ||||| |||||||| | ||||| || ||||||||||||| ||| ||||||||||| ||||| |
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| T |
2452347 |
aaaatctccgctgctctctcggccacttg---acattcacctcatctcttccacggcagccatatatggtggcaaaagggccaccattcataatggtgcc |
2452443 |
T |
|
| Q |
301 |
cctattcaaatcta |
314 |
Q |
| |
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|| || |||||||| |
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| T |
2452444 |
cccatccaaatcta |
2452457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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