View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4827_high_7 (Length: 327)
Name: NF4827_high_7
Description: NF4827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4827_high_7 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0205 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 55 - 327
Target Start/End: Original strand, 21178676 - 21178948
Alignment:
| Q |
55 |
aacctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgagtggaacacctagtgtaaagac |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21178676 |
aacctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgaatggaacacctagtgtaaagac |
21178775 |
T |
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| Q |
155 |
acgcagctatagagaaataaaagttgtgttgtggactaacgaaggacacaaatttcagtttttgtattatcctttacctccaatttatcttgtccttaaa |
254 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| |
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| T |
21178776 |
acgcagctatagagaaataaaagttgtgttgtggtttaacgaacgacacaaatttcagtttttgtgttatcccttacctccaatttgtcttgtccttaaa |
21178875 |
T |
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| Q |
255 |
tcagttttacaattcatatactatacaccaagagttgtcttatcctttgtttcattcttttgcaggtcaaatg |
327 |
Q |
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| T |
21178876 |
tcagttttacaattcaaacattatacatcaagagttgtcttatcttgtgtttcattcttttgcaggtcaaatg |
21178948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 2897 - 2776
Alignment:
| Q |
55 |
aacctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgagtggaacacctagtgtaaagac |
154 |
Q |
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| T |
2897 |
aacctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgaatggaacacctagtgtaaagac |
2798 |
T |
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| Q |
155 |
acgcagctatagagaaataaaa |
176 |
Q |
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| T |
2797 |
acgcagctatagagaaataaaa |
2776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 28360764 - 28360643
Alignment:
| Q |
55 |
aacctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgagtggaacacctagtgtaaagac |
154 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
28360764 |
aacctgtgccaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgaatggaacatctagtgtaaagac |
28360665 |
T |
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| Q |
155 |
acgcagctatagagaaataaaa |
176 |
Q |
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| T |
28360664 |
acgcagctatagagaaataaaa |
28360643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 18273992 - 18273870
Alignment:
| Q |
54 |
gaacctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgagtggaacacctagtgtaaaga |
153 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
18273992 |
gaacctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgaatggaacacctagattaaaga |
18273893 |
T |
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| Q |
154 |
cacgcagctatagagaaataaaa |
176 |
Q |
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||| ||||||||||||||||||| |
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| T |
18273892 |
cacacagctatagagaaataaaa |
18273870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 281
Target Start/End: Original strand, 41934632 - 41934740
Alignment:
| Q |
173 |
aaaagttgtgttgtggactaacgaaggacacaaatttcagtttttgtattatcctttacctccaatttatcttgtccttaaatcagttttacaattcata |
272 |
Q |
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|||||||||||||||| || |||| ||| ||||||||||||||| || || ||| | |||| ||||||| ||| | |||||||||||||| ||| | |
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| T |
41934632 |
aaaagttgtgttgtggtttagtgaagtacaagaatttcagtttttgtcttgtcttttgcatccagtttatctcatcccttaatcagttttacaaatcaca |
41934731 |
T |
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| Q |
273 |
tactataca |
281 |
Q |
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|||||||| |
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| T |
41934732 |
cactataca |
41934740 |
T |
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