View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4827_high_9 (Length: 303)

Name: NF4827_high_9
Description: NF4827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4827_high_9
NF4827_high_9
[»] chr4 (1 HSPs)
chr4 (11-303)||(8756821-8757116)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 8757116 - 8756821
Alignment:
Q  11 cacagagaatggtcgtagtctaacaataaaggcattccaaacatctaaaactcgaatagttcaaaaggtctttcaatcttatgggtacttttattcttaa 110  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8757116 cacagagaatggtcgtagtctaacaataaaggtattccaaacatctaaaactcgaatagttcaaaaggtctttcaatcttatgggtacttttattctcaa 8757017  T
Q  111 aaggtctggtatccagaagtatattgaaattaaaatcataactggtagctgagtctagtcgcagctgggttccttagtttg---attttcatgacatatt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  8757016 aaggtctggtatccagaagtatattgaaattaaaatcataactggtagctgagtctagtcgcagctgggttccttagtttgattattttcatgacatatt 8756917  T
Q  208 tgtggtggtggcccatggtatagtttgttcacgtgaatgtaatcaagataataactatcaatagcactgtggatttagacatctggtagtggggtt 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8756916 tgtggtggtggcccatggtatagtttgttcacgtgaatgtaatcaagataataactatcaatagcactgtggatttagacatgtggtagtggggtt 8756821  T

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