View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4828-Insertion-1 (Length: 650)

Name: NF4828-Insertion-1
Description: NF4828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4828-Insertion-1
NF4828-Insertion-1
[»] chr4 (3 HSPs)
chr4 (7-650)||(23595022-23595664)
chr4 (250-524)||(23586431-23586711)
chr4 (143-179)||(23586317-23586354)
[»] chr7 (8 HSPs)
chr7 (258-473)||(8016210-8016425)
chr7 (257-475)||(8104033-8104251)
chr7 (258-469)||(39986938-39987149)
chr7 (357-475)||(8647669-8647787)
chr7 (357-439)||(10493017-10493099)
chr7 (357-404)||(8655388-8655435)
chr7 (357-399)||(13332166-13332208)
chr7 (357-446)||(8602731-8602820)
[»] chr2 (4 HSPs)
chr2 (298-394)||(17716096-17716192)
chr2 (300-439)||(17666094-17666233)
chr2 (338-403)||(12244400-12244465)
chr2 (330-439)||(14705467-14705576)


Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 7 - 650
Target Start/End: Original strand, 23595022 - 23595664
Alignment:
Q  7 agaaatttcacgaaagatctataccgtccaaacaatacatccaacggctagaaactactactactataccgaacattccagacataaacttgtccctata 106  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  23595022 agaaatttctcgaaagatctataccgtccaaactatacatccaacggctagaaactactgctactataccgaacattccagacataaacttgtccttata 23595121  T
Q  107 ttaacacagtactttctctctgcaactcgttcagtttttcaaagaaaacaaaaacaaaacttcaattcattctttactacgctataaaccctagttctct 206  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| |||    
T  23595122 ttaacacagtactttctctctgcaactcattcagtttttcaaagaaaacaaaaacaaaacttcaattcatt---tactacgctataaaccctagttttct 23595218  T
Q  207 ttattctctgtttaaaccctagttttttctgttgcaaaatttc--gagagattatggctggaaaaggtgaaggacctgcaattggaatagatttgggaac 304  Q
    ||||||||| || ||||||||||||||||||| |||||| |||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23595219 ttattctctattcaaaccctagttttttctgtcgcaaaagttcttgagagattatggctggaaaaggagaaggacctgcaattggaatagatttgggaac 23595318  T
Q  305 aacttactcatgtgttggtgtttggcaacatgatcgtgttgaaatcatagcaaatgatcagggtaatagaactacaccttcttatgttgctttcactgat 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23595319 aacttactcatgtgttggtgtttggcaacatgatcgtgttgaaatcatagcaaatgatcagggtaatagaactacaccttcttatgttgctttcactgat 23595418  T
Q  405 acagaacgtttgatcggtgatgctgctaagaatcaggttgctatgaaccctactaacactgttttcggtaagtattctcaagttcttgatcgttgatttt 504  Q
    ||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23595419 acagaacgtttgatcggtgatgcagccaagaatcaagttgctatgaaccctaccaacactgttttcggtaagtattctcaagttcttgatcgttgatttt 23595518  T
Q  505 ccaaagtttttattctgtttcagtatttgtttctttaatgtcacaattaatcaagcatacatgatttgaaatttctaatgcataaggtagaaaagtaaat 604  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23595519 ccgaagtttttattctgtttcagtatttgtttctttaatgtcacaattaatcaagcatgcatgatttgaaatttctaatgcataaggtagaaaagtaaat 23595618  T
Q  605 gtaattgctcatcctgataaaattgctgatcttcatcttgattagg 650  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  23595619 gtaattgctcatcctgataaaattgttgatcttcatcttgattagg 23595664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 250 - 524
Target Start/End: Original strand, 23586431 - 23586711
Alignment:
Q  250 gagagattatggctggaaaaggtgaaggacctgcaattggaatagatttgggaacaacttactcatgtgttggtgtttggcaacatgatcgtgttgaaat 349  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23586431 gagagattatggctggaaaaggcgaaggacctgcaattggaatagatttgggaacaacttactcatgtgttggtgtttggcaacatgatcgtgttgaaat 23586530  T
Q  350 catagcaaatgatcagggtaatagaactacaccttcttatgttgctttcactgatacagaacgtttgatcggtgatgctgctaagaatcaggttgctatg 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23586531 catagcaaatgatcagggtaatagaactacaccttcttatgttgctttcactgatacagaacgtttgatcggtgatgctgctaagaatcaggttgctatg 23586630  T
Q  450 aaccctactaacactgttttcggtaagtattc------tcaagttcttgatcgttgattttccaaagtttttattctgttt 524  Q
    ||||||||||||||||||||||||||||| ||      |||| ||||| ||| || ||||||  |||||||||||||||||    
T  23586631 aaccctactaacactgttttcggtaagtactcttaaaatcaacttcttaatcctttattttctgaagtttttattctgttt 23586711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 23586317 - 23586354
Alignment:
Q  143 tttcaaagaaaacaaaa-acaaaacttcaattcattct 179  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  23586317 tttcaaagaaaacaaaaaacaaaacttcaattcattct 23586354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 7e-54; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 258 - 473
Target Start/End: Original strand, 8016210 - 8016425
Alignment:
Q  258 atggctggaaaaggtgaaggacctgcaattggaatagatttgggaacaacttactcatgtgttggtgtttggcaacatgatcgtgttgaaatcatagcaa 357  Q
    ||||| |||||||| ||||| |||||||| ||||||||| |||||||||| ||||| |||||||| || |||||||| ||||||||||| ||||| || |    
T  8016210 atggccggaaaaggagaaggtcctgcaatcggaatagatctgggaacaacgtactcgtgtgttggagtatggcaacacgatcgtgttgagatcattgcta 8016309  T
Q  358 atgatcagggtaatagaactacaccttcttatgttgctttcactgatacagaacgtttgatcggtgatgctgctaagaatcaggttgctatgaaccctac 457  Q
    ||||||| || ||  |||| || || ||||||||||||||||||||||  ||| | |||||||||||||||||||||||||||||||| |||||||||      
T  8016310 atgatcaagggaaccgaacgacgccgtcttatgttgctttcactgatagtgaaaggttgatcggtgatgctgctaagaatcaggttgcgatgaaccctgt 8016409  T
Q  458 taacactgttttcggt 473  Q
    ||||||||||||||||    
T  8016410 taacactgttttcggt 8016425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 257 - 475
Target Start/End: Complemental strand, 8104251 - 8104033
Alignment:
Q  257 tatggctggaaaaggtgaaggacctgcaattggaatagatttgggaacaacttactcatgtgttggtgtttggcaacatgatcgtgttgaaatcatagca 356  Q
    ||||||||| || ||||| || |||||||| ||||||||| |||||||||| ||||| |||||||| || |||||||| ||||||||||| ||||| ||     
T  8104251 tatggctggcaagggtgagggtcctgcaatcggaatagatctgggaacaacgtactcgtgtgttggagtatggcaacacgatcgtgttgagatcattgct 8104152  T
Q  357 aatgatcagggtaatagaactacaccttcttatgttgctttcactgatacagaacgtttgatcggtgatgctgctaagaatcaggttgctatgaacccta 456  Q
    |||||||| || || ||||| ||||| ||||||||||||||||||||||  ||| | |||||||||||||||||||||||||||||||| ||||| || |    
T  8104151 aatgatcaagggaacagaacgacaccgtcttatgttgctttcactgatagtgaaaggttgatcggtgatgctgctaagaatcaggttgcgatgaatccaa 8104052  T
Q  457 ctaacactgttttcggtaa 475  Q
    | ||||| ||||| |||||    
T  8104051 ccaacaccgtttttggtaa 8104033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 258 - 469
Target Start/End: Complemental strand, 39987149 - 39986938
Alignment:
Q  258 atggctggaaaaggtgaaggacctgcaattggaatagatttgggaacaacttactcatgtgttggtgtttggcaacatgatcgtgttgaaatcatagcaa 357  Q
    ||||| ||||| || |||||||| || || ||||| ||| | ||||| || |||||||| || ||||| ||||||||||| |||||||||||||| || |    
T  39987149 atggccggaaagggagaaggaccagcgatcggaatcgatcttggaaccacatactcatgcgtcggtgtatggcaacatgaccgtgttgaaatcatcgcca 39987050  T
Q  358 atgatcagggtaatagaactacaccttcttatgttgctttcactgatacagaacgtttgatcggtgatgctgctaagaatcaggttgctatgaaccctac 457  Q
    | || || |||||  | || || || ||||| || |||||||| ||  | || ||| | ||||||||||||||||||||||| ||||| ||||||||||     
T  39987049 acgaccaaggtaaccgtaccacgccgtcttacgtcgctttcaccgactccgagcgtctcatcggtgatgctgctaagaatcaagttgccatgaaccctat 39986950  T
Q  458 taacactgtttt 469  Q
     ||||| |||||    
T  39986949 caacaccgtttt 39986938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 475
Target Start/End: Complemental strand, 8647787 - 8647669
Alignment:
Q  357 aatgatcagggtaatagaactacaccttcttatgttgctttcactgatacagaacgtttgatcggtgatgctgctaagaatcaggttgctatgaacccta 456  Q
    |||||||| || || |||||||||||||||| |||||||||||| |||    || | ||||| |||||||| ||||| ||||||| ||||   |||||||    
T  8647787 aatgatcaaggaaacagaactacaccttcttttgttgctttcaccgatgatcaaaggttgattggtgatgccgctaaaaatcaggctgcttctaacccta 8647688  T
Q  457 ctaacactgttttcggtaa 475  Q
    | |||||||| || |||||    
T  8647687 ccaacactgtctttggtaa 8647669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 439
Target Start/End: Original strand, 10493017 - 10493099
Alignment:
Q  357 aatgatcagggtaatagaactacaccttcttatgttgctttcactgatacagaacgtttgatcggtgatgctgctaagaatca 439  Q
    |||||||| || ||||||||||||||||||| |||||||||||   ||    || | ||||||||||||||||||||||||||    
T  10493017 aatgatcaaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaaggttgatcggtgatgctgctaagaatca 10493099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 404
Target Start/End: Complemental strand, 8655435 - 8655388
Alignment:
Q  357 aatgatcagggtaatagaactacaccttcttatgttgctttcactgat 404  Q
    |||||||| || ||||||||||||||||||  ||||||||||||||||    
T  8655435 aatgatcaaggcaatagaactacaccttctgttgttgctttcactgat 8655388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 13332166 - 13332208
Alignment:
Q  357 aatgatcagggtaatagaactacaccttcttatgttgctttca 399  Q
    |||||||| || ||||||||||||||||||| |||||||||||    
T  13332166 aatgatcaaggaaatagaactacaccttcttttgttgctttca 13332208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 446
Target Start/End: Complemental strand, 8602820 - 8602731
Alignment:
Q  357 aatgatcagggtaatagaactacaccttcttatgttgctttcactgatacagaacgtttgatcggtgatgctgctaagaatcaggttgct 446  Q
    |||||||| || || |||||||| ||||||| ||||||||| ||||||    || | ||||||||||||||||| || ||||||| ||||    
T  8602820 aatgatcaaggaaacagaactactccttcttttgttgcttttactgatgataaaaggttgatcggtgatgctgccaaaaatcaggctgct 8602731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 298 - 394
Target Start/End: Original strand, 17716096 - 17716192
Alignment:
Q  298 tgggaacaacttactcatgtgttggtgtttggcaacatgatcgtgttgaaatcatagcaaatgatcagggtaatagaactacaccttcttatgttgc 394  Q
    ||||||| || |||||||| || ||||| ||||||||||| |||||||||||||| || || || || ||||| ||||||||||| ||||| |||||    
T  17716096 tgggaaccacatactcatgcgtaggtgtatggcaacatgaccgtgttgaaatcatcgccaacgaccaaggtaacagaactacaccatcttacgttgc 17716192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 17666094 - 17666233
Alignment:
Q  300 ggaacaacttactcatgtgttggtgtttggcaacatgatcgtgttgaaatcatagcaaatgatcagggtaatagaactacaccttcttatgttgctttca 399  Q
    ||||| || |||||||| || ||||| ||| ||||||| |||||||||||||| || || || || ||||| ||||| ||||| ||||| || || || |    
T  17666094 ggaaccacatactcatgcgtcggtgtatggaaacatgaccgtgttgaaatcatcgccaacgaccaaggtaacagaaccacaccgtcttacgtcgccttta 17666193  T
Q  400 ctgatacagaacgtttgatcggtgatgctgctaagaatca 439  Q
    | ||  |||| ||| | || |||||||| |||||||||||    
T  17666194 ccgactcagagcgtctcattggtgatgccgctaagaatca 17666233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 403
Target Start/End: Original strand, 12244400 - 12244465
Alignment:
Q  338 tcgtgttgaaatcatagcaaatgatcagggtaatagaactacaccttcttatgttgctttcactga 403  Q
    |||||||||||||||    || |||||||| || ||||| |||||||||| |||||||||||||||    
T  12244400 tcgtgttgaaatcattcacaacgatcagggcaacagaacaacaccttcttgtgttgctttcactga 12244465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 439
Target Start/End: Complemental strand, 14705576 - 14705467
Alignment:
Q  330 caacatgatcgtgttgaaatcatagcaaatgatcagggtaatagaactacaccttcttatgttgctttcactgatacagaacgtttgatcggtgatgctg 429  Q
    |||||| |||| |||||||||||    || ||||| || |||||||| || ||||||| |||||||||||| || |   | || ||||| ||||||||||    
T  14705576 caacattatcgagttgaaatcattcacaacgatcaaggcaatagaacaactccttcttttgttgctttcaccgaaaatcagcggttgattggtgatgctg 14705477  T
Q  430 ctaagaatca 439  Q
    ||||||||||    
T  14705476 ctaagaatca 14705467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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