View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4828-Insertion-2 (Length: 625)

Name: NF4828-Insertion-2
Description: NF4828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4828-Insertion-2
NF4828-Insertion-2
[»] chr1 (5 HSPs)
chr1 (121-330)||(14291950-14292159)
chr1 (353-398)||(14292701-14292746)
chr1 (388-435)||(14292770-14292817)
chr1 (493-559)||(24621923-24621983)
chr1 (330-360)||(14292172-14292202)
[»] chr2 (2 HSPs)
chr2 (121-213)||(23879531-23879623)
chr2 (395-496)||(23876722-23876825)
[»] chr5 (1 HSPs)
chr5 (395-490)||(5527854-5527951)
[»] chr3 (2 HSPs)
chr3 (395-488)||(7325-7420)
chr3 (395-492)||(3797971-3798070)
[»] chr4 (2 HSPs)
chr4 (443-484)||(44722759-44722800)
chr4 (395-435)||(50115308-50115348)
[»] chr7 (1 HSPs)
chr7 (395-435)||(46152137-46152177)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 1e-95; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 121 - 330
Target Start/End: Original strand, 14291950 - 14292159
Alignment:
Q  121 gaattcctccacaacatgttgccaaaagattataatctaaatctatgaagaagtatggaaaacccatccacaacatgcattctgttaacattcgttgctt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14291950 gaattcctccacaacatgttgccaaaagattataatctaaatctatgaagaagtatgggaaacccatccacaacatgcattctgttaacattcgttgctt 14292049  T
Q  221 ttccgttgatcttgaatatgtcttttttcctgtaaaccagaactatgtcttcgaacttacagaaattttgtttgatgtaatgctggtgagcagtgccgga 320  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||||||||||||| || ||||||| ||||||||    
T  14292050 ttccgttgatcttgaatatgtctttgttgctgtaaaccagaactatgtcgtcgaacttatagaaattttgtttgatgtaacgccggtgagcggtgccgga 14292149  T
Q  321 gaggtcgccg 330  Q
    ||||||||||    
T  14292150 gaggtcgccg 14292159  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 14292701 - 14292746
Alignment:
Q  353 taaaatatttgagcgtgggacaataatgagttactatgtttttgtt 398  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  14292701 taaaatatttgagcgtgggacaataatgagttgctatgtttttgtt 14292746  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 435
Target Start/End: Original strand, 14292770 - 14292817
Alignment:
Q  388 atgtttttgttccttatgtttaatctggaccacatatctaatccaatg 435  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  14292770 atgtttgtgttccttatgtttaatatggaccacatatctaatccaatg 14292817  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 493 - 559
Target Start/End: Complemental strand, 24621983 - 24621923
Alignment:
Q  493 ataaataagttagtaaatttgtttaaccttcttatcccctagatataaataagatcgctggttccct 559  Q
    |||||||||||||||||||||||||||| ||      ||||||||||||||||||||||||||||||    
T  24621983 ataaataagttagtaaatttgtttaaccctc------cctagatataaataagatcgctggttccct 24621923  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 360
Target Start/End: Original strand, 14292172 - 14292202
Alignment:
Q  330 gaggaagaaagaagtttggatcttaaaatat 360  Q
    |||||||||||||||||||||||||||||||    
T  14292172 gaggaagaaagaagtttggatcttaaaatat 14292202  T

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Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 23879623 - 23879531
Alignment:
Q  121 gaattcctccacaacatgttgccaaaagattataatctaaatctatgaagaagtatggaaaacccatccacaacatgcattctgttaacattc 213  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23879623 gaattcctccacaacatgttgccaaaatattataatctaaatctatgaagaagtatggaaaacccatccacaacatgcattctgttaacattc 23879531  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 395 - 496
Target Start/End: Complemental strand, 23876825 - 23876722
Alignment:
Q  395 tgttccttatgtttaatctggaccacatatctaatccaatg--nnnnnnnactccctcactagtgagggacctattagctacctcatcctagccgtcacc 492  Q
    ||||||||||||||||||| |||||||||||||||||||||         ||| |||||| |||||||||||||| | ||||||||||||||||| ||||    
T  23876825 tgttccttatgtttaatctagaccacatatctaatccaatggtattttttactacctcaccagtgagggacctatcaactacctcatcctagccgccacc 23876726  T
Q  493 ataa 496  Q
    ||||    
T  23876725 ataa 23876722  T

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Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 395 - 490
Target Start/End: Original strand, 5527854 - 5527951
Alignment:
Q  395 tgttccttatgtttaatctggaccacatatctaatccaatgnnnnnnn--actccctcactagtgagggacctattagctacctcatcctagccgtca 490  Q
    ||||||||||||||||||| |||||||||| ||||||||||         |||||||||   ||||||||||||||||||||||||||||||||||||    
T  5527854 tgttccttatgtttaatctagaccacatatttaatccaatgatattttttactccctcatcggtgagggacctattagctacctcatcctagccgtca 5527951  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 488
Target Start/End: Original strand, 7325 - 7420
Alignment:
Q  395 tgttccttatgtttaatctggaccacatatctaatccaatg--nnnnnnnactccctcactagtgagggacctattagctacctcatcctagccgt 488  Q
    ||||| ||||||||||||| |||||||||||||||||||||         ||||| |||  |||||| ||||||||||||||||||||||||||||    
T  7325 tgttctttatgtttaatctagaccacatatctaatccaatgatattttttactccatcatcagtgagagacctattagctacctcatcctagccgt 7420  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 492
Target Start/End: Original strand, 3797971 - 3798070
Alignment:
Q  395 tgttccttatgtttaatctggaccacatatctaatccaatg--nnnnnnnactccctcactagtgagggacctattagctacctcatcctagccgtcacc 492  Q
    ||||||||||||||||||| |||||||||||||||||||||         ||| ||||||  |||| | ||||||||||||||||||| |||||||||||    
T  3797971 tgttccttatgtttaatctagaccacatatctaatccaatggtattttttacttcctcaccggtgaagtacctattagctacctcatcatagccgtcacc 3798070  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 443 - 484
Target Start/End: Complemental strand, 44722800 - 44722759
Alignment:
Q  443 actccctcactagtgagggacctattagctacctcatcctag 484  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  44722800 actccctcactggtgagggacctattagctacctcatcctag 44722759  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 395 - 435
Target Start/End: Complemental strand, 50115348 - 50115308
Alignment:
Q  395 tgttccttatgtttaatctggaccacatatctaatccaatg 435  Q
    ||||||||||||||||||| ||||||||||||||| |||||    
T  50115348 tgttccttatgtttaatctagaccacatatctaattcaatg 50115308  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 435
Target Start/End: Original strand, 46152137 - 46152177
Alignment:
Q  395 tgttccttatgtttaatctggaccacatatctaatccaatg 435  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  46152137 tgttccttatgtttaatctagaccacatatctaatccaatg 46152177  T

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