View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4828-Insertion-3 (Length: 622)
Name: NF4828-Insertion-3
Description: NF4828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4828-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 12 - 462
Target Start/End: Original strand, 14130367 - 14130807
Alignment:
| Q |
12 |
atgccataaatagtgtaatatggttgaatcttgaacaagtatttggttgatggcaatagcaaaatcactatgagtagtacttgagagtgaacacagacca |
111 |
Q |
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| T |
14130367 |
atgccacaaatagtgtaatatggttgaatcttgaacaagtatttggttaatggcaatagcaaaatcactatgagtagtacttgagagttaacacagacca |
14130466 |
T |
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| Q |
112 |
taactgtctctacctctaccatactttgattaagagaggaccactttgcactctgatattagacatgtttttaaaatatgaaaatggccttatatgttct |
211 |
Q |
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| T |
14130467 |
taactgtctct------accatactttgattaggagaggaccactttccactctgatattagacatgtttttaaaatatgaaaatggccttatatgttct |
14130560 |
T |
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| Q |
212 |
tttcttcaccattgcaacgacaaaaaatgtagaagagcataagataaaagagcctgataaaacaaatctagaagaccaagaattctttattgactttcat |
311 |
Q |
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| T |
14130561 |
tttcttcaccattgcaacgacaataaatgtagaagagcataagataaaagagcctgataaaacaaatctagaagaccaagaattctttattgactttcat |
14130660 |
T |
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| Q |
312 |
acnnnnnnnntaaaaggaggcgcaagtgcaattatagcaaagataataagagcaatatgaagaatgtacgtagaagatctgaagatggaaaagccaacca |
411 |
Q |
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| T |
14130661 |
acaaaaaaaataaaaggaggtgcaagtgcaattatagcaaagataaaaagagcaatatgaagaat----gtagaagatctgaagatggaaaagccaacca |
14130756 |
T |
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| Q |
412 |
aaccctagtgcaattaaatatttatccccataacattacagatgataccgt |
462 |
Q |
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| T |
14130757 |
aaccctagtgcaattaaatatttatccccataacattacagatgataccgt |
14130807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 534 - 614
Target Start/End: Original strand, 14130823 - 14130902
Alignment:
| Q |
534 |
aatctcatcaccacctccatattttaagatgaattttaattatcatagttagctcccttaatcctttaatcttagctctgc |
614 |
Q |
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| T |
14130823 |
aatctcatcaccacctccatattttaaaatgaattttaattatcatagttagct-ccttaatcctttaatcttagctctgc |
14130902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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