View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4828-Insertion-4 (Length: 564)
Name: NF4828-Insertion-4
Description: NF4828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4828-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 8 - 555
Target Start/End: Complemental strand, 3119278 - 3118732
Alignment:
| Q |
8 |
atcctcaccaattttgaggagcgttggttgatggcattaaaaatgactacacttcaaaagatgaaaacttcacatgatgattcattactgaaaattgata |
107 |
Q |
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| T |
3119278 |
atcctcaccaattttgaggagcgttggttgatggcattaaaaatgactacacttcaaaagatgaaaacttcacatgatgattcattactgaaaattgata |
3119179 |
T |
|
| Q |
108 |
gaatctctgacattgttggcattgatgaagtacctttccatgatgaacataacaaggagaattggcatgttcaggtatcattgactgattgaattctcat |
207 |
Q |
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| T |
3119178 |
gaatctctgacattgttggcattgatgaagtacctttccatgatgaacataacaaggagaattggaatgttcaggtatcattgactgattgaattctcat |
3119079 |
T |
|
| Q |
208 |
tccctttaagaaactttcaattttgatgtatctaactgtttattgtattcttttaattgaagatcttccgttcgattgattccaattctgtgaaaggatt |
307 |
Q |
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| T |
3119078 |
tccctttaagaaactttcaattttgatgtatctaactgtttattgtattcttttaattgaagatcttccgttcgattgattccaattctgtgaaaggatt |
3118979 |
T |
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| Q |
308 |
tccaaaagaaccgaaagaggctatacaaagggtaaagtgactttattctcttctcaaacttagatcannnnnnnnnnctttctgtgaagtgttaatcaaa |
407 |
Q |
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| T |
3118978 |
tccaaaagaaccgaaagaggctatacaaagggtaaagtgactttattctcttctcaaacttagatca-tttttttttctttctgtgaagtgttaatcaaa |
3118880 |
T |
|
| Q |
408 |
gagctaatcatgtttattactttacttcattgaacagaacttggtttgtggaaagaatgtaatgatagacatgagcatacattctgcatatgtcaaggca |
507 |
Q |
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| T |
3118879 |
gagctaatcatgtttattactttacttcattgaacagaacttggtttgtggaaagaatgtaatgatagacatgagcatacattctgcatatgtcaaggca |
3118780 |
T |
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| Q |
508 |
atcagagcagcacaaaagttcatttatattgagaatcaatattttctt |
555 |
Q |
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| T |
3118779 |
atcagagcagcacaaaagttcatttatattgagaatcaatattttctt |
3118732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 365
Target Start/End: Complemental strand, 3112835 - 3112480
Alignment:
| Q |
11 |
ctcaccaattttgaggagcgttggttgatggcattaaaaatgactacacttcaaaagatgaaaacttcacatgatgattcattactgaaaattgatagaa |
110 |
Q |
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| T |
3112835 |
ctcaccaattttgaggagcgttggttaagagcactaaaaatgaatacacttcaaaagatgaaaacttcacatgatgattcattactgaaaattgacagaa |
3112736 |
T |
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| Q |
111 |
tctctgacattgttggcattgatgaagtacctttccatgatgaacataacaaggagaattggcatgttcaggtatcattgactgattgaattctcattcc |
210 |
Q |
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| T |
3112735 |
tctctgacattatcggcattcatgaagtaccttgccttgatgggcataacaaggagacttggcatgttcaggtatcattgactgattgaattctcattcc |
3112636 |
T |
|
| Q |
211 |
ctttaagaaact--ttcaattttgatgtatctaactgtttattgtattcttttaattgaagatcttccgttcgattgattccaattctgtgaaaggattt |
308 |
Q |
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| T |
3112635 |
ctttaagaaacttcttcaattttgatgtttctaaccgtttactacattctttaaattgaagatcttccgttcaattgattccaattctgtgaaaggattt |
3112536 |
T |
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| Q |
309 |
ccaaaagaaccgaaagaggctatacaaagggtaaagtgactttattctcttctcaaa |
365 |
Q |
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|||||| |||| ||||| || ||||||||||| ||||| ||| ||||||| |||||| |
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| T |
3112535 |
ccaaaacaacctaaagatgcaatacaaagggtgaagtg-cttcattctctgctcaaa |
3112480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 432 - 555
Target Start/End: Complemental strand, 3112428 - 3112305
Alignment:
| Q |
432 |
cttcattgaacagaacttggtttgtggaaagaatgtaatgatagacatgagcatacattctgcatatgtcaaggcaatcagagcagcacaaaagttcatt |
531 |
Q |
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| T |
3112428 |
cttcattgaacagaacttggtttgtggaaagaatgtaatgatagacatgagcatacattctgcatatgtcaaagcaatcagagcagcacagaagttcatt |
3112329 |
T |
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| Q |
532 |
tatattgagaatcaatattttctt |
555 |
Q |
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| T |
3112328 |
tatattgagaatcaatattttctt |
3112305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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