View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4828_high_2 (Length: 460)
Name: NF4828_high_2
Description: NF4828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4828_high_2 |
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| [»] scaffold0075 (2 HSPs) |
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Alignment Details
Target: scaffold0075 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: scaffold0075
Description:
Target: scaffold0075; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 28 - 196
Target Start/End: Original strand, 15065 - 15233
Alignment:
| Q |
28 |
atggggatatgctgacctttgccaccatcagaggagcaggtcatgaagctccttcttctcaaccagggagctctctggtgctttttaagtcctttttggg |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15065 |
atggggatatgctgacctttgccaccatcagaggagcagtttatgaagctccttcttctcaaccagggagctctctggtgctttttaagtcctttttgga |
15164 |
T |
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| Q |
128 |
aggaaaacagcttccaaaacattgaaaaattcattgtaatatgtaacatcattgtaattatcattaatc |
196 |
Q |
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| T |
15165 |
aggaaaacagcttccaaaacattgaaaaattcattgtaatatgtaacatcattgtaattatcattaatc |
15233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0075; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 342 - 434
Target Start/End: Original strand, 15377 - 15469
Alignment:
| Q |
342 |
tgcacattaccagcataattaacaataatagaggtaccattagctaagctaactctaacaaatttaatactgtaaaatgaactaaaatattga |
434 |
Q |
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| T |
15377 |
tgcacattaccagcataattaacaataatagaagtaccattagctaagctaactctaacaaatttaatactgtaaaatgaactaaaatattga |
15469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 30 - 173
Target Start/End: Complemental strand, 19920159 - 19920016
Alignment:
| Q |
30 |
ggggatatgctgacctttgccaccatcagaggagcaggtcatgaagctccttcttctcaaccagggagctctctggtgctttttaagtcctttttgggag |
129 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||| ||||||||| || |
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| T |
19920159 |
ggggacatgctgacctttgccaccatcagaggagcaggccatgaagctccttcttcccaaccagggaggtctccggtgctttttaaggcctttttggaag |
19920060 |
T |
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| Q |
130 |
gaaaacagcttccaaaacattgaaaaattcattgtaatatgtaa |
173 |
Q |
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| T |
19920059 |
gaaaacagcttccaaaacattgaaaaattcattgtagtatgtaa |
19920016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 14936305 - 14936447
Alignment:
| Q |
43 |
cctttgccaccatcagaggagcaggtcatgaagctccttcttctcaaccagggagctctctggtgctttttaagtcctttttgggaggaaaacagcttcc |
142 |
Q |
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||||||| ||||| |||||||||||||||| |||||| | | ||||||||||||| |||||||||||||| || ||||||||| ||||||||| ||||| |
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| T |
14936305 |
cctttgcaaccataagaggagcaggtcatgcagctccctttactcaaccagggaggtctctggtgcttttcaaagcctttttggaaggaaaacaacttcc |
14936404 |
T |
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| Q |
143 |
aaaacattgaaaaattcattgtaatatgtaacatcattgtaat |
185 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14936405 |
aaaacattgaaaaattcattgtaatatttaacatcattgtaat |
14936447 |
T |
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