View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4828_high_3 (Length: 416)
Name: NF4828_high_3
Description: NF4828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4828_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 52 - 416
Target Start/End: Original strand, 37201261 - 37201621
Alignment:
| Q |
52 |
tggggattttgtactttctgtaaagtgggtttatgaaatagcacattagcacacattgttgcttattttgattttagattttgtcaataagtatatctag |
151 |
Q |
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| T |
37201261 |
tggggattttgtactttctgtaaagtgggtttatgaaatagcacattagtacacattgttgcttattctgattttagattttgtcaataagtatatctag |
37201360 |
T |
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| Q |
152 |
gactgaatgtgttatattccatagatgaagttgagagaaagttagaaaacttttgttttgatggtaatgaatgagtaatattgcaaatgagaaaattgac |
251 |
Q |
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| T |
37201361 |
gactgaatgtgttatattccatagatgaagttgagagaaagttagaaaacttttgtattgatggtaatg----agtaatattgcaaatgagaaaattgac |
37201456 |
T |
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| Q |
252 |
ctttttatgaggtgattacatctatatataggcaccaccactaagtaccaaaaactactatctttaatagtagcaaagcggacggagtgagtaaagcaag |
351 |
Q |
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| T |
37201457 |
ctttttatgaggtgattacatctatatataggcaccaccactaagtaccaaaaactactatctctaatagtagcaaagcggacggagtgagtaaagcaag |
37201556 |
T |
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| Q |
352 |
agcccctgccctttgggcttggtccatttgttagttgtgatacaactaggagggggtagagggtg |
416 |
Q |
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| T |
37201557 |
agcccctgccctttgggcttggtccatttgttagttgtgatacaactaggaggggatagagggtg |
37201621 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 316
Target Start/End: Original strand, 48090478 - 48090533
Alignment:
| Q |
258 |
atgaggtgattacatctatatataggcaccaccactaagtaccaaaaactactatcttt |
316 |
Q |
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| T |
48090478 |
atgaggtgattacatctatatatagg---caccactaagtaccagttactactatcttt |
48090533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 402
Target Start/End: Original strand, 2743485 - 2743531
Alignment:
| Q |
356 |
cctgccctttgggcttggtccatttgttagttgtgatacaactagga |
402 |
Q |
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| T |
2743485 |
cctgccctttgggcttggcccatttgtttgttgggttacaactagga |
2743531 |
T |
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