View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4828_high_6 (Length: 322)
Name: NF4828_high_6
Description: NF4828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4828_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 45 - 296
Target Start/End: Original strand, 8817273 - 8817524
Alignment:
| Q |
45 |
gaacctgtgtctctgtatgtatcttggaatatagtacactatttgttctgaacacgagcaataagtccaatccacaccccaagacataagaaaaagccat |
144 |
Q |
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| T |
8817273 |
gaacctgtgtctctgtatgtatcttggaatatagtacactatttgttctgaacacgagcaataagtccaatccacaccccaagacataagaaaaagccat |
8817372 |
T |
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| Q |
145 |
aatcaaatacacaagcatgaaacaatgtgctccgatgcaagaattttcacttagtggcacactagtggcttcaagatcataaagataaccagcaatgaga |
244 |
Q |
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| T |
8817373 |
aatcaaatacacaagcatgaaacaatgtgctccgatgcaagaattttcacttcgtggcacactagtggcttcaagatcataaagataaccagcaatgaga |
8817472 |
T |
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| Q |
245 |
ccagaaaagaggaatgaaccaacagaaaggttgagaatgaggatgttttata |
296 |
Q |
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| T |
8817473 |
tcagaaaagaggaatgaaccaatagaaaggttgagaatgaggatgttttata |
8817524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 54 - 296
Target Start/End: Original strand, 8818889 - 8819128
Alignment:
| Q |
54 |
tctctgtatgtatcttggaatatagtacactatttgttctgaacacgagcaataagtccaatccacaccccaagacataagaaaaagccataatcaaata |
153 |
Q |
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| T |
8818889 |
tctctgtatgtatcttggaatata---cattctttgttctaaatgcaagaaacaggtctaatccacaccccaatacacaagcgaaagccataatcacata |
8818985 |
T |
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| Q |
154 |
cacaagcatgaaacaatgtgctccgatgcaagaattttcacttagtggcacactagtggcttcaagatcataaagataaccagcaatgagaccagaaaag |
253 |
Q |
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| T |
8818986 |
cacaagcatgaaacaatgtgctccactgcaagtgtttccgcctcctggcacactggtggcttcaatatcataaaggtagccggcaatgagaccagaaaag |
8819085 |
T |
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| Q |
254 |
aggaatgaaccaacagaaaggttgagaatgaggatgttttata |
296 |
Q |
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| T |
8819086 |
atgaatgaaccgataggaaggttgagaatgaggatgttgtata |
8819128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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