View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4828_high_7 (Length: 308)

Name: NF4828_high_7
Description: NF4828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4828_high_7
NF4828_high_7
[»] chr4 (1 HSPs)
chr4 (2-298)||(42468007-42468295)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 2 - 298
Target Start/End: Complemental strand, 42468295 - 42468007
Alignment:
Q  2 ataaaagtgtgactctttgttgttttccacatatctagtaattgttggcttctgttgttaattacgtaagctagctacatattgatccgcatcacgcagg 101  Q
    ||||||||||||||| |||||||||||||||||       |||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||    
T  42468295 ataaaagtgtgactccttgttgttttccacata-------attgttggcttctgttgttaattatgtaagctagctacatattgacctgcatcacgcagg 42468203  T
Q  102 atgaaaataatataagcttcgttatgtatttcatccctacaaatatattgttactagtcaatatgtcttttccattaataatgagtgtatacttattgag 201  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42468202 atgaaaataatataagcttcattatgtatttcatccctacaaatatattg-tactagtcaatatgtcttttccattaataatgagtgtatgcttattgag 42468104  T
Q  202 ctattacttgctcagatgtgtcgaagttttctggtcnnnnnnnnctcttggataaaagattcaacatttactgatagaaaactcgctataagaataa 298  Q
    ||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42468103 ctattacttgctcagatgtgtcgaagttttctggtcttttttctctcttggataaaagattcaacatttactgatagaaaactcgctataagaataa 42468007  T

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