View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4829-Insertion-1 (Length: 667)
Name: NF4829-Insertion-1
Description: NF4829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4829-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 218 - 642
Target Start/End: Original strand, 7383592 - 7384011
Alignment:
| Q |
218 |
atttgtgaaaattcgactaatgtggccaaatttacaagtgcaatgagattgcacaagcataaaaaacttgaccttacgaccataatttcattcataatgt |
317 |
Q |
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| T |
7383592 |
atttgtgaaaattcgactaatgtggccaaatttacaagtgcaatgagattgcacaagcataaaaaactt-accttacgaccataatttcattcataatgt |
7383690 |
T |
|
| Q |
318 |
caacagagaatgcaatttaaaactttgagtataattagcaaaattaacatatattttcgttgtgtttgcagcaatgaaaacatctctaccagttttttgt |
417 |
Q |
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| T |
7383691 |
caacagagaatgcaatttaaaactttgagtataattagcaaaattaacatatattttcgttgtgtttgcagcaatgaaaacatctctaccagttttttgt |
7383790 |
T |
|
| Q |
418 |
tgtcaaaacaatgtagttaaatgagtcaaaaatgttaatatcgcattcaagaaattattaatttatcaggacacaaaataggtaaacttttagtgttgtt |
517 |
Q |
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| T |
7383791 |
tgtcaaaacaatgtagttaaatgagtcaaaaatgttaatatcacattcaagaaattattaatttatcaggacacaaaataggtaaacttttagtgttgtt |
7383890 |
T |
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| Q |
518 |
ttaactaaaatcttacaactaccataatttccctcaaatgatttcttactataannnnnnnnnacaatgtagtaaagggatagtgaacccatataaaggc |
617 |
Q |
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| T |
7383891 |
ttaactaaaatcttacaactaccataatttccctcaaatgatttcttactataa--ttttcttacaatgtagtaaa-ggatagtgaa-tcatataaaggg |
7383986 |
T |
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| Q |
618 |
gagttaaatcactataaaattataa |
642 |
Q |
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| T |
7383987 |
gagttaaatcactataaaattataa |
7384011 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 42599838 - 42599876
Alignment:
| Q |
40 |
tttaatcatttcattgatgataatattttatttgatctt |
78 |
Q |
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| T |
42599838 |
tttaatcgtttcattgatgataaaattttatttgatctt |
42599876 |
T |
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