View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4829-Insertion-2 (Length: 620)

Name: NF4829-Insertion-2
Description: NF4829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4829-Insertion-2
NF4829-Insertion-2
[»] chr6 (11 HSPs)
chr6 (383-616)||(1453756-1453989)
chr6 (383-616)||(1465448-1465681)
chr6 (179-533)||(1470922-1471277)
chr6 (173-534)||(7564749-7565111)
chr6 (331-533)||(1459540-1459746)
chr6 (334-534)||(370783-370987)
chr6 (179-310)||(1442325-1442456)
chr6 (179-309)||(176001-176131)
chr6 (357-534)||(176216-176387)
chr6 (477-534)||(1442106-1442163)
chr6 (39-68)||(371244-371273)
[»] chr7 (1 HSPs)
chr7 (29-536)||(3926603-3927114)
[»] chr4 (1 HSPs)
chr4 (179-533)||(55419479-55419834)
[»] chr2 (1 HSPs)
chr2 (179-229)||(11237396-11237446)
[»] scaffold0015 (2 HSPs)
scaffold0015 (179-244)||(40658-40723)
scaffold0015 (491-531)||(32330-32370)
[»] chr3 (5 HSPs)
chr3 (487-532)||(2456255-2456300)
chr3 (489-532)||(1438003-1438046)
chr3 (487-533)||(3754606-3754652)
chr3 (487-532)||(771499-771544)
chr3 (193-229)||(793211-793247)
[»] scaffold0044 (1 HSPs)
scaffold0044 (481-532)||(89143-89194)
[»] chr5 (2 HSPs)
chr5 (487-533)||(11081819-11081865)
chr5 (179-223)||(6402064-6402108)
[»] chr1 (1 HSPs)
chr1 (179-244)||(24233687-24233752)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 383 - 616
Target Start/End: Complemental strand, 1453989 - 1453756
Alignment:
Q  383 cgcagcccgattttggtctagatgatactctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgcttacgctaatgactctttgga 482  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1453989 cgcagcccgattttggtctagatgatcctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctcacgctaatgactctttgga 1453890  T
Q  483 tatctgggttatgaagtattatggaaataaagactcttggaataaattgttcgccattccgttcatggaactttgttacaatggtattggttttttcagt 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1453889 tatctgggttatgaagtattatggaaataaagactcttggaataaattgttcgccattccgttcatggaactttgttacaatggtattggttttttcagt 1453790  T
Q  583 ctgctttatatttccg-ggaggagtggccaagtgt 616  Q
    |||||||||||||||| |||||| |||||||||||    
T  1453789 ctgctttatatttccgaggagga-tggccaagtgt 1453756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 383 - 616
Target Start/End: Complemental strand, 1465681 - 1465448
Alignment:
Q  383 cgcagcccgattttggtctagatgatactctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgcttacgctaatgactctttgga 482  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1465681 cgcagcccgattttggtctagatgatcctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctcacgctaatgactctttgga 1465582  T
Q  483 tatctgggttatgaagtattatggaaataaagactcttggaataaattgttcgccattccgttcatggaactttgttacaatggtattggttttttcagt 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1465581 tatctgggttatgaagtattatggaaataaagactcttggaataaattgttcgccattccgttcatggaactttgttacaatggtattggttttttcagt 1465482  T
Q  583 ctgctttatatttccg-ggaggagtggccaagtgt 616  Q
    |||||||||||||||| |||||| |||||||||||    
T  1465481 ctgctttatatttccgaggagga-tggccaagtgt 1465448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 179 - 533
Target Start/End: Complemental strand, 1471277 - 1470922
Alignment:
Q  179 aaaactcaagttagggttcatactttaggtaccaatttttggagaaggattttagacttcccttctgaaatcataggtgtacccaaagggtatgttggga 278  Q
    ||||||| ||||| ||||||||||||||||| |||||||||||||| ||||  ||||||||||||| |  |||| |||  |||| |||||||| | | ||    
T  1471277 aaaactctagttaaggttcatactttaggtaacaatttttggagaacgattcaagacttcccttctcagctcatgggtcaacccgaagggtatatggcga 1471178  T
Q  279 aacatgtaagtggcaccattaattgggccataagaaatcaagcgatcatttgctcttcatgggttattctttctctcga----ggaaacgagtcttatca 374  Q
    ||  |||| |||| ||||||||||||| | ||  | |||||| ||    |  ||||||| |||| |||||||||||  |    |||||||||||||||||    
T  1471177 aatttgtatgtggtaccattaattgggtcgtactagatcaagagaa---tgactcttcacgggtcattctttctcttaatttaggaaacgagtcttatca 1471081  T
Q  375 agagatttcgcagcccgattttggtctagatgatactctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgcttacgctaatgac 474  Q
    ||||||||  ||||| |||| || | |||||||  |||||| | |||| |||||||| || |||||||||| |||||||||||||||| |  | ||        
T  1471080 agagattttacagcctgattatgatttagatgaacctctgcgtaactttagcttgggggtttctagggattacttatgcatccttgctcataccaaatct 1470981  T
Q  475 tctttggatatctgggttatgaagtattatggaaataaagactcttggaataaattgtt 533  Q
    | ||||||||| |||||||||||  |||||||||||||||| ||||||  |||||||||    
T  1470980 tttttggatatttgggttatgaaagattatggaaataaagattcttggtctaaattgtt 1470922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 173 - 534
Target Start/End: Complemental strand, 7565111 - 7564749
Alignment:
Q  173 ttttgtaaaactcaagttagggttcatactttaggtaccaatttttggagaaggattttagacttcccttctgaaatcataggtgtacccaaagggtatg 272  Q
    ||||| ||||||||||||| ||||||||||||||||| |||| ||||||||||||||  ||||||||||||||||| ||  ||||||||  ||||   ||    
T  7565111 ttttgcaaaactcaagttaaggttcatactttaggtagcaatgtttggagaaggattccagacttcccttctgaaaacaagggtgtacctgaaggacgtg 7565012  T
Q  273 ttgggaaacatgtaagtggcaccattaattgggccataagaaatcaagcgatcatttgctcttcatgggttattctttctctcg----aggaaacgagtc 368  Q
    ||||||||  |||||||||| ||||| |||||| ||||| | |||||  ||| | |  |||||||||||| |||||||| || |    ||| ||||||||    
T  7565011 ttgggaaatttgtaagtggcgccattcattgggtcataaaagatcaa--gat-aatgactcttcatgggtcattctttcccttgatttaggtaacgagtc 7564915  T
Q  369 ttatcaagagatttcgcagcccgattttggtctagatgatactctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgcttacgct 468  Q
    |||||||||||||| |||||| |||| |||| |  |  |   ||||| | |||| ||||| || || | |||||||||||||||  |||||||| || ||    
T  7564914 ttatcaagagattttgcagccagattatggtgttcaccaacgtctgcgttactttagcttaggggtttgtagggattgcttatgggtccttgctcacact 7564815  T
Q  469 aatgactctttggatatctgggttatgaagtattatggaaataaagactcttggaataaattgttc 534  Q
    |     | |||| |||| |||||||||||| |||||||||| || || ||||||| ||||||||||    
T  7564814 acaacttttttgaatatttgggttatgaaggattatggaaacaaggattcttggactaaattgttc 7564749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 331 - 533
Target Start/End: Complemental strand, 1459746 - 1459540
Alignment:
Q  331 ctcttcatgggttattctttctctcga----ggaaacgagtcttatcaagagatttcgcagcccgattttggtctagatgatactctgcatgacttgagc 426  Q
    ||||||| |||| ||||||||||| ||    ||||||||||||||||||||||||| ||||||  ||| |||| |||||||  |||||||| |||| |||    
T  1459746 ctcttcacgggtcattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatggtttagatgaacctctgcataactttagc 1459647  T
Q  427 ttgggagtatctagggattgcttatgcatccttgcttacgctaatgactctttggatatctgggttatgaagtattatggaaataaagactcttggaata 526  Q
    ||||| || | |||||||| ||||||| |||||||| |  | ||    | ||||||||| |||||||||||  ||| |||||||||||| ||||||| ||    
T  1459646 ttgggggtttatagggattacttatgcgtccttgctcatacaaaatcttttttggatatttgggttatgaaagattttggaaataaagaatcttggacta 1459547  T
Q  527 aattgtt 533  Q
    |||||||    
T  1459546 aattgtt 1459540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 334 - 534
Target Start/End: Complemental strand, 370987 - 370783
Alignment:
Q  334 ttcatgggttattctttctctcga----ggaaacgagtcttatcaagagatttcgcagcccgattttggtctagatgatactctgcatgacttgagcttg 429  Q
    ||||||||| ||||||||||| ||    | ||| |||| ||||||||||||||||||||| |||| ||||||||||||  |||||| ||| ||   ||||    
T  370987 ttcatgggtcattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttg 370888  T
Q  430 ggagtatctagggattgcttatgcatccttgcttacgctaatgactctt-tggatatctgggttatgaagtattatggaaataaagactcttggaataaa 528  Q
    |  || ||||||||||||||||||||||||||| |  ||||  ||| || |||   | |||||||||||| |||||||||||||||| ||||||| ||||    
T  370887 gaggtttctagggattgcttatgcatccttgctcagactaa-aacttttatgggcgtttgggttatgaagaattatggaaataaagattcttggactaaa 370789  T
Q  529 ttgttc 534  Q
    ||||||    
T  370788 ttgttc 370783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 179 - 310
Target Start/End: Complemental strand, 1442456 - 1442325
Alignment:
Q  179 aaaactcaagttagggttcatactttaggtaccaatttttggagaaggattttagacttcccttctgaaatcataggtgtacccaaagggtatgttggga 278  Q
    |||||| ||||||||||||||||||||||||| |||||||||| ||||||   ||||||||||||||||||||| | |||| || |  ||| |  |||||    
T  1442456 aaaactgaagttagggttcatactttaggtactaatttttggaaaaggatcccagacttcccttctgaaatcatggatgtagccgattggtgtcatggga 1442357  T
Q  279 aacatgtaagtggcaccattaattgggccata 310  Q
     |  | ||||||||||||||||||||||||||    
T  1442356 tatttttaagtggcaccattaattgggccata 1442325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 176001 - 176131
Alignment:
Q  179 aaaactcaagttagggttcatactttaggtaccaatttttggagaaggattttagacttcccttctgaaatcataggtgtacccaaagggtatgttggga 278  Q
    ||||||||||||| |||||| |||||||| ||||| | |||||||||||||  ||||||||||||  || |||| ||| ||||| ||||| ||||||| |    
T  176001 aaaactcaagttaaggttcacactttaggcaccaactcttggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggca 176100  T
Q  279 aacatgtaagtggcaccattaattgggccat 309  Q
    ||  ||||||||||| | || ||||||||||    
T  176101 aatttgtaagtggcagcgttcattgggccat 176131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 357 - 534
Target Start/End: Original strand, 176216 - 176387
Alignment:
Q  357 aggaaacgagtcttatcaagagatttcgcagcccgattttggtctagatgatactctgcatgacttgagcttgggagtatctagggattgcttatgcatc 456  Q
    |||||| ||||| ||||  |||||||| |||||||||| |||||||       |||||||| |||| |||||||| || |||||||||||| ||||| ||    
T  176216 aggaaatgagtcgtatcgggagatttcccagcccgattatggtctac------ctctgcataacttcagcttgggggtttctagggattgcctatgcgtc 176309  T
Q  457 cttgcttacgctaatgactctttggatatctgggttatgaagtattatggaaataaagactcttggaataaattgttc 534  Q
    |||||| || |  |    | ||||||||| |||  ||||||  |||||||||||||||| ||||||| ||||||||||    
T  176310 cttgctcacaccgaaacttttttggatatttggcgtatgaatgattatggaaataaagattcttggactaaattgttc 176387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 477 - 534
Target Start/End: Complemental strand, 1442163 - 1442106
Alignment:
Q  477 tttggatatctgggttatgaagtattatggaaataaagactcttggaataaattgttc 534  Q
    ||||||||  |||||||||||| ||||||||| |||||| ||||||| ||||||||||    
T  1442163 tttggatacatgggttatgaaggattatggaattaaagattcttggactaaattgttc 1442106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 371273 - 371244
Alignment:
Q  39 tcaagatattgccacctttggaaaatctac 68  Q
    ||||||||||||||||||||||||||||||    
T  371273 tcaagatattgccacctttggaaaatctac 371244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 29 - 536
Target Start/End: Original strand, 3926603 - 3927114
Alignment:
Q  29 accgggaaagtcaagatattgccacctttggaaaatctacataattgtacaactcaaactatatacatcatcggatatgatcgtttcattgataaataca 128  Q
    ||||||||| |||||||||||||||||||||||||| ||| |||  ||| |||||| ||| |||||| ||| || |||||||||||  ||||||| ||||    
T  3926603 accgggaaattcaagatattgccacctttggaaaatatacctaacggtaaaactcacactttatacagcattgggtatgatcgttttgttgataattaca 3926702  T
Q  129 aagtagttgctgttaatcgtgatc---aatgtcgtagctcttttaatttttgtaaaactcaagttagggttcatactttaggtaccaatttttggagaag 225  Q
    ||||||||||| ||  | |  |||   ||  |  ||  |||| ||| | ||| ||  |||||||||||||||||||| ||||||||||||||||||| ||    
T  3926703 aagtagttgctttttcttgccatcgtcaaattaataaatcttataagtattgcaactctcaagttagggttcatactctaggtaccaatttttggaggag 3926802  T
Q  226 gattttagacttcccttctgaaatcataggtgtacccaaagggtatgttgggaaacatgtaagtggcaccattaattgggccataagaaatcaagcgatc 325  Q
    ||||  | ||||||||||  | ||||| ||| ||||||| |||||||||||||||  |||||||||||| |||||||||||||||  |||||||  || |    
T  3926803 gattccaaacttcccttcaaatatcatgggtttacccaatgggtatgttgggaaatttgtaagtggcacaattaattgggccatagaaaatcaaaagaac 3926902  T
Q  326 atttgctcttcatgggttattctttctctcg----aggaaacgagtcttatcaagagatttcgcagcccgattttggtctagatgatactctgcatgact 421  Q
     | ||   ||||||||| ||||||||||| |    |||||||||||| |||||||||||||| | ||||||||||||||| |||||| |  | |||  ||    
T  3926903 -tatg--attcatgggtcattctttctcttgatttaggaaacgagtcctatcaagagatttcacggcccgattttggtcttgatgatccggttcatatct 3926999  T
Q  422 tgagcttgggagtatctagggattgcttatgcatccttgcttacgctaatgactct-ttggatatctgggttatgaagtattatggaaataaagactctt 520  Q
    | | ||| || || |||| ||||||||| ||  |||||| |||| || |  ||| | |||| ||| |||||||||||| |||||||||||||| | ||||    
T  3927000 tcaccttaggggtttctaaggattgcttgtgtgtccttgtttacactga-aactttgttgggtatttgggttatgaaggattatggaaataaaaattctt 3927098  T
Q  521 ggaataaattgttcgc 536  Q
    ||| ||||||||||||    
T  3927099 ggactaaattgttcgc 3927114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 179 - 533
Target Start/End: Original strand, 55419479 - 55419834
Alignment:
Q  179 aaaactcaagttagggttcatactttaggtaccaatttttggagaaggattttagacttcccttctgaaatcataggtgtacccaaagggtatgttggga 278  Q
    |||||||||||||||| |||||||||||||||||| ||||||| ||||||   ||||||||||||||||||||  ||| | ||| ||| || |   ||||    
T  55419479 aaaactcaagttagggctcatactttaggtaccaacttttggaaaaggataccagacttcccttctgaaatcacgggtttgcccgaagagtgtccgggga 55419578  T
Q  279 aacatgtaagtggcaccattaattgggccataagaaatcaagcgatcatttgctcttcatgggttattctttctctcg----aggaaacgagtcttatca 374  Q
    ||  ||||||||||||||||||||||||||||  | |||||| |   |  | || |  |||||| ||||||||||| |    |||||| |||||||||||    
T  55419579 aatttgtaagtggcaccattaattgggccatagaagatcaagag---aaatactatctatgggtcattctttctctggatttaggaaatgagtcttatca 55419675  T
Q  375 agagatttcgcagcccgattttggtctagatgatactctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgcttacgctaatgac 474  Q
    || |||| |||| ||||| | ||||||||||||  |  ||    |||||| |||| | || || | ||||||||||||| || ||||| || | |||       
T  55419676 agtgattccgcatcccgagtatggtctagatgaaccgttggtctacttgaacttgagtgtttccaaggattgcttatgcgtcgttgctcacaccaattct 55419775  T
Q  475 tctttggatatctgggttatgaagtattatggaaataaagactcttggaataaattgtt 533  Q
    | ||||||||||||| ||||||||  ||||||||||||||| ||||||| |||||||||    
T  55419776 tttttggatatctggcttatgaaggtttatggaaataaagattcttggactaaattgtt 55419834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 11237396 - 11237446
Alignment:
Q  179 aaaactcaagttagggttcatactttaggtaccaatttttggagaaggatt 229  Q
    ||||||||||| | ||| |||||||| ||||||||||||||||||||||||    
T  11237396 aaaactcaagtgaaggtccatactttgggtaccaatttttggagaaggatt 11237446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 40723 - 40658
Alignment:
Q  179 aaaactcaagttagggttcatactttaggtaccaatttttggagaaggattttagacttcccttct 244  Q
    |||||||||||||  ||||||||||| || ||||| | |||||||||||||  |||||||||||||    
T  40723 aaaactcaagttaaagttcatactttgggcaccaactcttggagaaggattgaagacttcccttct 40658  T

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Target: scaffold0015; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 491 - 531
Target Start/End: Complemental strand, 32370 - 32330
Alignment:
Q  491 ttatgaagtattatggaaataaagactcttggaataaattg 531  Q
    |||||||| | |||||||||||||||||||||| |||||||    
T  32370 ttatgaaggaatatggaaataaagactcttggattaaattg 32330  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 487 - 532
Target Start/End: Original strand, 2456255 - 2456300
Alignment:
Q  487 tgggttatgaagtattatggaaataaagactcttggaataaattgt 532  Q
    |||||||||||| | |||||||||||||||||||||| ||||||||    
T  2456255 tgggttatgaaggaatatggaaataaagactcttggactaaattgt 2456300  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 532
Target Start/End: Original strand, 1438003 - 1438046
Alignment:
Q  489 ggttatgaagtattatggaaataaagactcttggaataaattgt 532  Q
    |||||||||| | |||||||||||||||||||||| ||||||||    
T  1438003 ggttatgaaggaatatggaaataaagactcttggattaaattgt 1438046  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 533
Target Start/End: Original strand, 3754606 - 3754652
Alignment:
Q  487 tgggttatgaagtattatggaaataaagactcttggaataaattgtt 533  Q
    |||||||||||| | |||||||||||||| ||||||| |||||||||    
T  3754606 tgggttatgaaggaatatggaaataaagagtcttggactaaattgtt 3754652  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 532
Target Start/End: Complemental strand, 771544 - 771499
Alignment:
Q  487 tgggttatgaagtattatggaaataaagactcttggaataaattgt 532  Q
    |||||||||||| | |||||||||| ||||||||||| ||||||||    
T  771544 tgggttatgaaggaatatggaaatacagactcttggactaaattgt 771499  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 793247 - 793211
Alignment:
Q  193 ggttcatactttaggtaccaatttttggagaaggatt 229  Q
    |||||||||| |||||||||||| |||||||||||||    
T  793247 ggttcatactctaggtaccaattgttggagaaggatt 793211  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 532
Target Start/End: Original strand, 89143 - 89194
Alignment:
Q  481 gatatctgggttatgaagtattatggaaataaagactcttggaataaattgt 532  Q
    ||||| |||||||||||| | |||||||||||||| ||||||| ||||||||    
T  89143 gatatttgggttatgaaggaatatggaaataaagagtcttggactaaattgt 89194  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 533
Target Start/End: Original strand, 11081819 - 11081865
Alignment:
Q  487 tgggttatgaagtattatggaaataaagactcttggaataaattgtt 533  Q
    |||||||||||| | |||||||||||||| ||||||| |||||||||    
T  11081819 tgggttatgaaggagtatggaaataaagagtcttggactaaattgtt 11081865  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 6402108 - 6402064
Alignment:
Q  179 aaaactcaagttagggttcatactttaggtaccaatttttggaga 223  Q
    ||||||||||||| |||||||||||| |||||| ||| |||||||    
T  6402108 aaaactcaagttatggttcatactttgggtaccgattcttggaga 6402064  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 24233752 - 24233687
Alignment:
Q  179 aaaactcaagttagggttcatactttaggtaccaatttttggagaaggattttagacttcccttct 244  Q
    |||||||||||||  |||||||| ||||||||| | | |||||||||||||   ||||||||||||    
T  24233752 aaaactcaagttaaagttcatacattaggtaccgactcttggagaaggattaaggacttcccttct 24233687  T

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