View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4829-Insertion-3 (Length: 584)
Name: NF4829-Insertion-3
Description: NF4829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4829-Insertion-3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 8 - 584
Target Start/End: Original strand, 33401221 - 33401797
Alignment:
| Q |
8 |
attttttccaccaatccatgttgtggttgatagaatcacactctttgttcctccaaattgatatgtattataattgttctctattactacagttatttca |
107 |
Q |
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| T |
33401221 |
attttttccaccaatccatgttgtggttgatagaatcacactctttgttcctccaaattgatatgtattataattgttctctattactaccgttatttca |
33401320 |
T |
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| Q |
108 |
tcgttagcttcaaggtcgacttcaatcttcccgtataattttctgaatgtaggcagtgctgctgttctcatccatacaatcagatcctcttgttcactca |
207 |
Q |
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| T |
33401321 |
tcgttagcttcaaggtcgacttcaatcttcccgtataattttctgaatgtaggcagtgctgctgttctcatccatacaatcagatcctcttgttcactca |
33401420 |
T |
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| Q |
208 |
actgtttcattccacatcaacacaaacaagattaattttctcaaaatgtcgacaagaaaattatatttaacacgnnnnnnnttatatagtgacgaagata |
307 |
Q |
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| T |
33401421 |
actgtttcattccacatcaacacaaacaagattaattttctcaaaatgtcgacaagaaaattatatttaacacgaaaaaaattatatagtgacaaagata |
33401520 |
T |
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| Q |
308 |
tataaatatttacttacaggtatgctctcattaagtctagcacccccaattaaaccgccagtctgaaaatttttaggataaacatcagacccaaatttgg |
407 |
Q |
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| T |
33401521 |
tataaatatttacttacaggtatgctctcattaagtctagcacccccaattaaactgccagtctgaaaatttttaggataaacatcagacccaaatttgg |
33401620 |
T |
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| Q |
408 |
ccttttggtcacttttccatgctatattctttttgttaatcaccaagtccttattattgtttgaaaatctgtatgtgtcattgaatagactccatgcagc |
507 |
Q |
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| T |
33401621 |
ccttttggtcacttttccatgctatattctttttgttaatcaccaagtccttattattgtttgaaaatctgtatgtgtcattgaatagactccaagcagc |
33401720 |
T |
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| Q |
508 |
aaggccgcgaggaacaaccggaagataaccatttgcagtatagtcttcaggaaagcatttgcctacatcattctcat |
584 |
Q |
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| T |
33401721 |
aaggccacaaggaacaaccggaagataaccatttgcagtatagtcttcaggaaagcatttgcctacatcattctcat |
33401797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 43601010 - 43600904
Alignment:
| Q |
105 |
tcatcgttagcttcaaggtcgacttcaatcttcccgtataattttctgaatgtaggcagtgctgctgttctcatccatacaatcagatcctcttgttcac |
204 |
Q |
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| T |
43601010 |
tcatcgttaacttcaagatcggactctatcttcccatacagttttctgaacgttggtaatgctgctgttctcatccaaacaatcagatcctcttgttcac |
43600911 |
T |
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| Q |
205 |
tcaactg |
211 |
Q |
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| T |
43600910 |
tcaactg |
43600904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 505
Target Start/End: Complemental strand, 43599615 - 43599429
Alignment:
| Q |
319 |
acttacaggtatgctctcattaagtctagcacccccaattaaaccgccagtctgaaaatttttaggataaacatcagacccaaatttggccttttggtca |
418 |
Q |
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||||||||||| ||| ||||| ||| | ||||| ||||| ||||| ||| |||||||||||||||||||||| ||| |||||||| | |||| |||| |
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| T |
43599615 |
acttacaggtacgctttcattgagttttgcacctccaatcaaacctccactctgaaaatttttaggataaacttcatgaccaaatttagaatttttgtca |
43599516 |
T |
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| Q |
419 |
cttttccatgctatattctttttgttaatcaccaagtccttattattgtttgaaaatctgtatgtgtcattgaatagactccatgca |
505 |
Q |
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| T |
43599515 |
cttccccatgctatgttctttttgttgatagttaaatccttgttgtcaattgaaaatttgtaggtgtcattgaacatactccatgca |
43599429 |
T |
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