View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4829-Insertion-5 (Length: 494)
Name: NF4829-Insertion-5
Description: NF4829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4829-Insertion-5 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: scaffold0280 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 14 - 491
Target Start/End: Complemental strand, 9247 - 8775
Alignment:
| Q |
14 |
acggtggtgggatcggaagaagaaggcgaacggagtgagagagtgtgagaagtgccagtatgaagaatgcgaagaagggagagattgaaattgggaaatt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9247 |
acggtggtgggatcggaagaagaaggcgaacggagtgagagagtgtgagaagtgccagtatgaagaatgcgaagaagggagagattgaaattgggaaatt |
9148 |
T |
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| Q |
114 |
tgatgggaagtagtcttgcggtgattggagagcagaagagtgggccatgtgaccatttagaagagagacctttagtgtgatcggaatgaagatgtgttaa |
213 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9147 |
tgatgggaagtagtctggcggtgattggagagcagaagagtgggccatgtgaccatttagaagagagacctttagtgtgatcggaatgaagatgtgttaa |
9048 |
T |
|
| Q |
214 |
gaagtatgcttcactaccctttccccaacgatctactgatattaacccttcttccatttttggtgatggagaaagaaacactaaaagtgtgaacctcttt |
313 |
Q |
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| T |
9047 |
gaagtatgcttcactaccctttccccaacgatctactgatattaacccttcttccatttttggtgatggagaaagaaacactaaaagtgtgaacctcttt |
8948 |
T |
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| Q |
314 |
ctttgaagcgtgtaagtgattatgagaatgagaaatttgactttatatttgcatttggggaatgcttagcgggaatttttcgaccnnnnnnnnngttctg |
413 |
Q |
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| T |
8947 |
ctttgaagc--ttaagtgattatgagaatgagaaattttactttatatttgcatttggggaatgcttagcggggatttttcga-ctttttttttgttctg |
8851 |
T |
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| Q |
414 |
gcgggaaaattgagaaaatggggaaatgagtaatgatcctgacttctttgcgtgtgaggtaactgaacaggtttggtt |
491 |
Q |
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| T |
8850 |
gcgggaaaattgagaaaatggggaaatgagtaatgatccttacttctttgc--gtgaggtaactgaacaggtttggtt |
8775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 392
Target Start/End: Complemental strand, 21909653 - 21909262
Alignment:
| Q |
8 |
acaatgacggtggtgggatcggaagaagaaggcgaacggagtgagagagtgtgagaagtgccagtatgaagaatgcgaagaagggagagattgaaattgg |
107 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||| |||||| || |||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
21909653 |
acaatgacggtggtgggattggaagaagaaggtgaacggagtgagatagtgtgggaggtgccagtatgaagaatgcggagaagagagagattgaaattgg |
21909554 |
T |
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| Q |
108 |
gaaatttgatgggaagtagtcttgcggtgattggagagcagaagagtgggccatgtgaccatttagaagagagacctttagtgtgatcggaatgaagatg |
207 |
Q |
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| T |
21909553 |
ggaatttgattggaagtagtctggcggtgattggagagcagaagagtgggccatgtgaccatttagaagaaaggcctttagtgtgatcggagtgaagatg |
21909454 |
T |
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| Q |
208 |
tgttaagaagtatgcttcactaccctttccccaacgatctactgatattaacccttcttccatttttggtgatggagaaagaaacact--------aaaa |
299 |
Q |
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| T |
21909453 |
tgttaagaaatatgcttcacttcctcttgcccaacgatctaccgatattaaaccatcttccatttttggtgacggagaaagaaacactgctgttaaaaaa |
21909354 |
T |
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| Q |
300 |
gtgtgaacctctttctttgaagcgtgtaagtgattatgagaatgagaaatttgactttatatttgcatttggggaatgctta-gcgggaatttt |
392 |
Q |
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| T |
21909353 |
gtgtgaacctctttctttg--gagtgtaagtgatgatgagaatgagaaattttcttttatatttttatttggggaatgcttaggcgggaatttt |
21909262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 326 - 393
Target Start/End: Complemental strand, 26727951 - 26727884
Alignment:
| Q |
326 |
taagtgattatgagaatgagaaatttgactttatatttgcatttggggaatgcttagcgggaattttt |
393 |
Q |
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| T |
26727951 |
taagtgatgatgagaatgagaaattttattttatatttgtatttggggaatgcttagcgggaattttt |
26727884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 26728050 - 26727972
Alignment:
| Q |
97 |
attgaaattgggaaatttgatgggaagtagtcttgcggtgattggagagcagaagagtgggccatgtgaccatttagaa |
175 |
Q |
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|||||||||||| ||| |||||||||| ||| | || ||||||| ||||||||||||||||||||| || |||| |||| |
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| T |
26728050 |
attgaaattggggaatatgatgggaaggagtttggcagtgattgaagagcagaagagtgggccatgggagcattgagaa |
26727972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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