View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4829-Insertion-6 (Length: 426)
Name: NF4829-Insertion-6
Description: NF4829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4829-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 8 - 413
Target Start/End: Original strand, 49756118 - 49756519
Alignment:
| Q |
8 |
actaccattcttgacatgtaataaatgtaagtattgtgtcacacgtctgtgcctatgatatttgacatgacaatgtatcatcagaatcatggtgaaccac |
107 |
Q |
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| T |
49756118 |
actaccattcttaacatgtaa---atgtaagtattgtgtcacacgtctgtgcctatgatatttgacatgacaatgtatcatcagaattatggtgaaccat |
49756214 |
T |
|
| Q |
108 |
tttgataagaaaagatatgttatatgattatttgatttaaaattttggaatccttgattctaattgtttggcacaagacgaatgtggtggggacactaaa |
207 |
Q |
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| T |
49756215 |
tttgataagaaaa-atatgttatatgattatttgatttaaaattttggaatccttgattctaattgtttggcacaagacgaatgtggtggggacactaaa |
49756313 |
T |
|
| Q |
208 |
catgttgggattggcaaagagagtgggtgcacgatttttgctgacaagtacaagtgaggtgtacggtgatccacttcaacaccctcaagctgagacttac |
307 |
Q |
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| T |
49756314 |
catgttgggattggcaaagagagtgggtgcacgatttttgctgactagtacaagtgaggtgtacggtgatccacttcaacaccctcaagctgagacttac |
49756413 |
T |
|
| Q |
308 |
tggggcaatgttaatcctattggtaataataaagtttatttcattaaactctttcaaatcttagccttgattttaattttaagtaagctatgttctattt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
49756414 |
tggggcaatgttaatcctattggtaataataaagtttatttcattaaactctttcaaatcttagccttgattttagttttaattaagctatgttctattt |
49756513 |
T |
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| Q |
408 |
tatttt |
413 |
Q |
| |
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| T |
49756514 |
tatttt |
49756519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 331
Target Start/End: Complemental strand, 39567189 - 39567038
Alignment:
| Q |
180 |
acaagacgaatgtggtggggacactaaacatgttgggattggcaaagagagtgggtgcacgatttttgctgacaagtacaagtgaggtgtacggtgatcc |
279 |
Q |
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|||||||||||||||| || ||| | |||||| | |||||||| || ||||| || || |||| ||||| ||||||||||||||||| || |||||||| |
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| T |
39567189 |
acaagacgaatgtggtcggaacattgaacatgcttggattggcgaaaagagttggagctagattcttgctaacaagtacaagtgaggtttatggtgatcc |
39567090 |
T |
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| Q |
280 |
acttcaacaccctcaagctgagacttactggggcaatgttaatcctattggt |
331 |
Q |
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|| | || ||||| |||||||||||||| || |||||||| |||||| |
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| T |
39567089 |
tctggagcatcctcagaaggagacttactggggaaacgttaatccaattggt |
39567038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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