View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4829-Insertion-8 (Length: 383)
Name: NF4829-Insertion-8
Description: NF4829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4829-Insertion-8 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 318
Target Start/End: Original strand, 52512056 - 52512387
Alignment:
| Q |
8 |
gataccataacaattaggacattcagtaaattcacaaacatcttgtgctcgcttcctgttaagagctttccattttcctgtaccaccacacatatcacct |
107 |
Q |
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| T |
52512056 |
gataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgtaccaccacacatatcacct |
52512155 |
T |
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| Q |
108 |
aaatgaaa----------agtagtattataataaggaagaagaatattattatta-----------aaaaagaatgaggagaaaagagaagaggactcac |
186 |
Q |
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| T |
52512156 |
aaatgaaatgaaatgaaaagtagtattataataaggaagaatattattattattattattattataacaaagaatgaagagaaaagagaagaggactcac |
52512255 |
T |
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| Q |
187 |
aaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcattaattaaaaatggagttgaaca |
286 |
Q |
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| T |
52512256 |
aaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcattaattaaaaatggagttgaaca |
52512355 |
T |
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| Q |
287 |
caaacatttaagacattgacgcctcgaaacaa |
318 |
Q |
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| T |
52512356 |
caaacatttaagacattgacgcctcgaaacaa |
52512387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 52512413 - 52512455
Alignment:
| Q |
338 |
ctatatgaatgcaattaattaagttaatgatgagtgagtgagt |
380 |
Q |
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| T |
52512413 |
ctatatgaatgcaattaattaagttaatgatgagtgagtgagt |
52512455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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