View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4829_high_8 (Length: 240)
Name: NF4829_high_8
Description: NF4829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4829_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 882645 - 882536
Alignment:
| Q |
49 |
atagataataaattcatatataaatgtgaaccgcgttactaaaaatatatatgcttaattcccttgcttttcacaatatccaacttgagaagatgcttac |
148 |
Q |
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| T |
882645 |
atagatattaaatccatatataaatgtgaaccccgttactaaaaatatatatgcttaatgccccttcttttcacagtatctaccttctgaagatgcttac |
882546 |
T |
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| Q |
149 |
tgggtgaaga |
158 |
Q |
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| T |
882545 |
tgggtgaaga |
882536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 882377 - 882322
Alignment:
| Q |
166 |
ccatttttaaaagtacataaaacaaagaatttcataacattctcatatgtgatgtg |
221 |
Q |
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| T |
882377 |
ccatttttagtagtacataaaacaaagaatttcataacattttcatatgtgatgtg |
882322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 882740 - 882700
Alignment:
| Q |
181 |
cataaaacaaagaatttcataacattctcatatgtgatgtg |
221 |
Q |
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| T |
882740 |
cataaaacaaagaatttcataatattctcatatgtgatgtg |
882700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 882791 - 882749
Alignment:
| Q |
4 |
caaaaagactatagtagttgatattcttggatagatagtgttga |
47 |
Q |
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| T |
882791 |
caaaaagactatagt-gttgatattcttgaatagatagtgttga |
882749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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