View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4829_low_1 (Length: 842)
Name: NF4829_low_1
Description: NF4829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4829_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 788; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 788; E-Value: 0
Query Start/End: Original strand, 17 - 832
Target Start/End: Original strand, 523269 - 524084
Alignment:
| Q |
17 |
acatccatggtaactttcctttttcataatagaacatgtgtagactgaatgaagtgtctttgtggatttcatcaattaattgagtttctaaatttgcagg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
523269 |
acatccatggtaactttcctttttcataatagaacatgtgtagactgaatgaagtgtctttgtggatttcatcaattaattgagtttctaaatttgcagg |
523368 |
T |
|
| Q |
117 |
tctgaatatatacttctggctctccttcatccctgcaattgtatgtataataatctgttcatgcttttcaataaaattaaaatgaagcagttttttgaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
523369 |
tctgaatatatacttctggctctccttcatccctgcaattgtatgtataataatctgttcatgcttttcaataaaattaaaatgaagcagatttttgaaa |
523468 |
T |
|
| Q |
217 |
atcattatggttaacatatgatttctctacgcgtaaaagcttgtgatgttaataggtacaaaacttcaacatgttgtatccattttagcacttgaaatct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
523469 |
atcattatggttaacatatgatttctctacgcgtaaaagcttgtgatgttaataggtacaaaacttcaacatgttgtatccattttagcacttgaaatct |
523568 |
T |
|
| Q |
317 |
ggcagcagcagggtcctagtgccagaacacaagtaaagccgcgcgatggtcttttttggttcaaaaaaccagatatattgttatggatcatacagtttgt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
523569 |
ggcagcagcagggtcctagtgccagaacacaagtaaagccgcgcgatggtcttttttggttcaaaaaaccagatatattgttatggatcatacagtttgt |
523668 |
T |
|
| Q |
417 |
gatatttcaggtaaaatatgcaatgcatttgtaattatttggtaaccgcgtcattcttcacagttgctttcctatttgtccttattttctctattgttca |
516 |
Q |
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| T |
523669 |
gatatttcaggtaaaatatgtaatgcatttataattatttggtaaccgcgtcattcttcacagttgctttcctatttgtccttattttctctattgttca |
523768 |
T |
|
| Q |
517 |
tgcagaatgcctttgaaatggcctcatttatatggacattggtaagatttaaatttttcatgaatgtatctatgcctacatttgttccattacttgaatt |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
523769 |
tgcagaatgcctttgaaatggcctcatttatatggacattggtaagatttaaatttttcatgaatgtatctatgcctacatttgttccattacttgaatt |
523868 |
T |
|
| Q |
617 |
aatctgcttaaggccttctttcattctttgatcattttttcctgtatgactatgtctagtggggatttaaagaaaaatcatgcttcatgagacaccatta |
716 |
Q |
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| T |
523869 |
aatctgcttaaggccttctttcattctttgatcattttttcctgtatgtctatgtctagtggggatttaaagaaaaatcatgcttcatgagacaccatta |
523968 |
T |
|
| Q |
717 |
catgatcatcattcggttgacatcagggttagtttcaatgtttcatctctttctaaagaattctttgttctacttaattgacttattttccagattctac |
816 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
523969 |
catgatcatcattcggttgacatcagggttagtttcaatgtttcatctctttctaaggaattctttgttctccttaattgacttattttccagattctac |
524068 |
T |
|
| Q |
817 |
aatacttttcaatttc |
832 |
Q |
| |
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|| ||||||||||||| |
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| T |
524069 |
aaaacttttcaatttc |
524084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 269 - 332
Target Start/End: Original strand, 3298187 - 3298250
Alignment:
| Q |
269 |
taggtacaaaacttcaacatgttgtatccattttagcacttgaaatctggcagcagcagggtcc |
332 |
Q |
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|||||||||||||||||| |||||| || | |||||||||||||||| || || |||||||||| |
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| T |
3298187 |
taggtacaaaacttcaacttgttgtgtctactttagcacttgaaatcagggagtagcagggtcc |
3298250 |
T |
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