View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4829_low_2 (Length: 338)
Name: NF4829_low_2
Description: NF4829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4829_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 164 - 320
Target Start/End: Original strand, 29631638 - 29631794
Alignment:
| Q |
164 |
ctcagcagctagctattgcaatacaacggactgtgataacgctggaaacgacaaacacacgtcgttttcagatctcggactctcggaatggatggtgcgg |
263 |
Q |
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| T |
29631638 |
ctcagcagctagctattgtaatacaacggactgtgataacgctggaaacgacaaacacatgtcgttttcagatctaggactctcggaatggatggtgcgg |
29631737 |
T |
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| Q |
264 |
ggttgcgataaactcgggatgcaatctcctcggcccgtgcaacgacactgcattcca |
320 |
Q |
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| T |
29631738 |
ggttgcgataaactcgggatgcaatctccgcggcccgtgcaacgacactgcattcca |
29631794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 29631491 - 29631603
Alignment:
| Q |
16 |
ctgtgaaatggattctaaacctggcagccgcacatggatttctcccataaccagtgagtcgcactctctcctttccctttcttccttcctggtcaaccgt |
115 |
Q |
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| T |
29631491 |
ctgtgaaatggattctaaacctggcagccgcacatggatttctcccataaccagtgagtcgcactctctcctttccctttcttccttcctggtcaaccgt |
29631590 |
T |
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| Q |
116 |
aacagcttacttc |
128 |
Q |
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| T |
29631591 |
aacagcttacttc |
29631603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 29630583 - 29630674
Alignment:
| Q |
228 |
ttttcagatctcggactctcggaatggatggtgcggggttgcgataaactcgggatgcaatctcctcggcccgtgcaacgacactgcattcc |
319 |
Q |
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| T |
29630583 |
ttttccgatctcggactctcggaatggacggtgcagaattgcaagaagctcgggatgcaaacaccgcggcgcgtgcaacaacactgcattcc |
29630674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 260
Target Start/End: Complemental strand, 28390281 - 28390248
Alignment:
| Q |
227 |
gttttcagatctcggactctcggaatggatggtg |
260 |
Q |
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| T |
28390281 |
gttttcagatctcggactctcagaatggatggtg |
28390248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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