View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4829_low_7 (Length: 250)
Name: NF4829_low_7
Description: NF4829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4829_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 43004118 - 43004365
Alignment:
| Q |
1 |
aaatatttaagagattttcaagaatcattctaaacacacaaatcaagaacaaagaaataaattgaaactttcaaagctggttagaatagaagatgaatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43004118 |
aaatatttaagagattttcaagaatcattctaaacacacaaatcaagaacaaagaaataaattgaaactttcaaagctggttagaatagaagatgaatat |
43004217 |
T |
|
| Q |
101 |
gaatat------aaagaagcattttcaccatgtcttatgtctatgaggaaaataagatnnnnnnngtgactgaatcaagagatttggaaaacctttatct |
194 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43004218 |
gaatatgaatataaagaagcattttcaccatgtcttatgtctaagaggaaaataagataaaaaaagtgactgaatcaagagatttggaaaacctttatct |
43004317 |
T |
|
| Q |
195 |
tgatacgctccacaattgtctcaaccaacaacctttgaggagaattat |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43004318 |
tgatacgctccacaattgtctcaaccaacaacctttgaggagaattat |
43004365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University