View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4829_low_9 (Length: 243)
Name: NF4829_low_9
Description: NF4829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4829_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 40426887 - 40427095
Alignment:
| Q |
19 |
gtttatcatagtcaccttgagaaatcacacttccaaaattcaagttttcaccatacccgatctcggttttaggcttcttaacctttgaatcattattcga |
118 |
Q |
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| T |
40426887 |
gtttataataatcaccttgagaaatcacacttccaaaattcaagttttcaccatacccgatctcggttttaggcttcttaacctttgaatcattattcga |
40426986 |
T |
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| Q |
119 |
ataatcaaatgaaatgattttgggagaagccttgagtaatttagttggtggtgttgctgaggcaacagattgatctggactttgagtagggaaagaactg |
218 |
Q |
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| T |
40426987 |
gtaatcaaatgaaatgattttgggagaagccttgagtagtttagttggtggtgttgctgaggcaacagattgatctggactttgagtagggaaagaactg |
40427086 |
T |
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| Q |
219 |
ttctgtgtg |
227 |
Q |
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||||||||| |
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| T |
40427087 |
ttctgtgtg |
40427095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 40441975 - 40442183
Alignment:
| Q |
19 |
gtttatcatagtcaccttgagaaatcacacttccaaaattcaagttttcaccatacccgatctcggttttaggcttcttaacctttgaatcattattcga |
118 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40441975 |
gtttataataatcaccttgagaaatcacacttccaaaattcaagttttcaccatacccgatctcggttttaggcttcttaacctttgaatcattattcga |
40442074 |
T |
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| Q |
119 |
ataatcaaatgaaatgattttgggagaagccttgagtaatttagttggtggtgttgctgaggcaacagattgatctggactttgagtagggaaagaactg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40442075 |
gtaatcaaatgaaatgattttgggagaagccttgagtagtttagttggtggtgttgctgaggcaacagattgatctggactttgagtagggaaagaactg |
40442174 |
T |
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| Q |
219 |
ttctgtgtg |
227 |
Q |
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||||||||| |
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| T |
40442175 |
ttctgtgtg |
40442183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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