View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4830-Insertion-1 (Length: 820)
Name: NF4830-Insertion-1
Description: NF4830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4830-Insertion-1 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 805; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 805; E-Value: 0
Query Start/End: Original strand, 8 - 820
Target Start/End: Complemental strand, 36635273 - 36634461
Alignment:
| Q |
8 |
attagaacttgatctagagaaggaaagacatcttttatgacaaatcagtgttggagtagtttctggtgagaatttgtgatgcaacatattgatttgaagc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36635273 |
attagaacttgatctagagaaggaaagacatcttttatgacaaatcagtgttggagtagtttctggtgagaatttgtgatgcaacatattgatttgaagc |
36635174 |
T |
|
| Q |
108 |
ctcagtgtaatgagtcccgtcccagcttacatacacaccgctatcattgcaaccttttgctgtaattgtggtcccattcaagatcgttgttgttagtcca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36635173 |
ctcagtgtaatgagtcccgtcccagcttacatacacaccgctatcattgcaaccttttgctgtaattgtggtcccattcaagatcgttgttgttagtcca |
36635074 |
T |
|
| Q |
208 |
caagaaacgcgactgtcatagttaaatggcggacctccatatccacagcaagccataaaaggttgttcaaaccctgcaaacaaataatgatacaaattta |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36635073 |
caagaaacgcgactgtcatagttaaatggcggacctccatatccacagcaagccataaaaggttgttcaaaccctgcaaacaaataatgatacaaattta |
36634974 |
T |
|
| Q |
308 |
atattgtttaacccatcaagtagtgacatgttagaaaggaaaatgacttgaacagcaataataggttttactgtaacggaaatataagctgaatttagat |
407 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36634973 |
acattgtttaacccatcaagtagtgacatgttagaaaggaaaatgacttgaacagcaataataggttttactgtaacggaaatataagctgaatttagat |
36634874 |
T |
|
| Q |
408 |
gaagcaacaatgaaatttttctagttatacttaccatgttttgagtagtttgcaatgaggtccaattttatggtaaagatatcaacatatgtaacattta |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36634873 |
gaagcaacaatgaaatttttctagttatacttaccatgttttgagtagtttgcaatgaggtccaattttatggtaaagatatcaacatatgtaacattta |
36634774 |
T |
|
| Q |
508 |
gatctagatactggccctgcaattttgcccacaaagcttgcaactgtagattaaaggccttagcagcttggttgtgtgcaccaagacatcctagttcatc |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36634773 |
gatctagatactggccctgcaattttgcccacaaagcttgcaactgtagattaaaggccttagcagcttggttgtgtgcaccaagacatcctagttcatc |
36634674 |
T |
|
| Q |
608 |
aatctttgatttatcatggccaaatgtggcaacattttgacccaagcatccaagtggacctgtgttatgtacccaaaaattcctagccccgtggtcatat |
707 |
Q |
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| T |
36634673 |
aatctttgatttatcatggccaaatgtggcaacattttgacccaagcatccaagtggacctgtgttatgtacccaaaaattcctagccccgtggtcatat |
36634574 |
T |
|
| Q |
708 |
agtctctatcacaaataagagagtgaatgttaatttcagcaaaacaacttttctactgtggagttcaagtcaagaatgttttcaataaaaaacgtaacaa |
807 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36634573 |
agtctctatcacaaataagagagtgaatgttaatttcagcaaaacaatttttctactgtggagttcaagtcaagaatgttttcaataaaaaacgtaacaa |
36634474 |
T |
|
| Q |
808 |
attcattgttatt |
820 |
Q |
| |
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||||||||||||| |
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| T |
36634473 |
attcattgttatt |
36634461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 423 - 744
Target Start/End: Complemental strand, 36639626 - 36639302
Alignment:
| Q |
423 |
tttttctagttatacttaccatgttttgagtagtttgcaatgaggtccaattttatggtaaagatatcaacatatgtaacatttagatctagatactggc |
522 |
Q |
| |
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|||| |||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
36639626 |
ttttgctagatatacttaccatgttgtgagtagtttgcaatgaggtctaattttatggtaaagatatcaacatatgtaacatttacatctggatactggc |
36639527 |
T |
|
| Q |
523 |
cctgcaattttgcccacaaagcttgcaactgtagattaaaggccttagcagcttggttgtgtgcaccaagacatcctagttcatcaatctttgatttatc |
622 |
Q |
| |
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|||||||||| || ||| |||| | | | ||||||| || ||||||||| ||| ||| || |||||||||||||||||||| || ||| ||| |
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| T |
36639526 |
cctgcaatttactgcagaaatcttgaagatattgattaaaagctttagcagctaagttatgttaacgaagacatcctagttcatcaagtttcgatggatc |
36639427 |
T |
|
| Q |
623 |
atggccaaatgtggcaacattttgacccaagcatccaagtggacctgtgttatgtacccaaaaattcctagccccgtggtcatatagtctctat--caca |
720 |
Q |
| |
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| ||||||| || || | ||| |||||||||||||||||| | |||||||| || ||||||||| ||||| |||||| ||||||| | |||| |
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| T |
36639426 |
agtgccaaatagggaaataaaatgagccaagcatccaagtggactcgcgttatgtatccgaaaattcctgaccccgatgtcatacagtctctgtcacaca |
36639327 |
T |
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| Q |
721 |
aataagagagt-gaatgttaatttc |
744 |
Q |
| |
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||||||||||| |||||| |||||| |
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| T |
36639326 |
aataagagagtggaatgtcaatttc |
36639302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 34 - 309
Target Start/End: Complemental strand, 36639938 - 36639662
Alignment:
| Q |
34 |
gacatcttttatgacaaatcagtgttggagtagtttctggtgagaatttgtgatgcaacatattgatttgaagcctcagtgtaatgagtcccgtcccagc |
133 |
Q |
| |
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||||| |||| || ||||| ||||||| ||| |||| |||||||||||||||||||||||| ||||| ||||| || |||||| |||||||||| |
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| T |
36639938 |
gacatattttctggcaaatgagtgttgatgtaatttccagtgagaatttgtgatgcaacatatcgatttttggcctcggtaaaatgagctccgtcccagc |
36639839 |
T |
|
| Q |
134 |
ttacatacacaccgctatcattgcaaccttttgctgtaattgtggtcccattcaagatcgttgttgttagtccacaagaaacgcgactgtcatagttaaa |
233 |
Q |
| |
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|| ||||||||| |||| |||||||||||| ||||||| | |||| ||||| |||| | ||||| | |||||| ||||||||||||||||||| || |
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| T |
36639838 |
tt-catacacactactattattgcaacctttggctgtaactatggtgccatttaagacctttgtttct---ccacaaaaaacgcgactgtcatagttcaa |
36639743 |
T |
|
| Q |
234 |
tggcggacctccatatccacagcaagccataaaaggttg-----ttcaaaccctgcaaacaaataatgatacaaatttaat |
309 |
Q |
| |
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|||||| |||||||||||||| |||||||||| || || ||||||||||||||||||||| ||||||||||||| |
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| T |
36639742 |
tggcgggcctccatatccacaacaagccataatcggctgttcaattcaaaccctgcaaacaaatagccatacaaatttaat |
36639662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 36636779 - 36636708
Alignment:
| Q |
40 |
ttttatgacaaatcagtgttggagtagtttctggtgagaatttgtgatgcaacatattgatttgaagcctca |
111 |
Q |
| |
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|||| |||||||| |||||||||||| ||| ||||| ||||| ||||||||||||| |||||| ||||||| |
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|
| T |
36636779 |
ttttctgacaaatgagtgttggagtaattttcggtgaaaatttatgatgcaacatatcgatttgcagcctca |
36636708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 7e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 73 - 287
Target Start/End: Original strand, 46936691 - 46936902
Alignment:
| Q |
73 |
gtgagaatttgtgatgcaacatattgatttgaagcctcagtgtaatgagtcccgtcccagcttacatacacaccgctatcattgcaaccttttgctgtaa |
172 |
Q |
| |
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|||||||| |||||||||||||||||||||| || ||||||||||||| | ||||||||| | | |||| || |||||||| |||||||||||||||| |
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| T |
46936691 |
gtgagaatctgtgatgcaacatattgatttgcagtctcagtgtaatgaattccgtcccagttgatatactcagaactatcattacaaccttttgctgtaa |
46936790 |
T |
|
| Q |
173 |
ttgtggtcccattcaagatcgttgttgttagtccacaagaaacgcgactgtcatagttaaatggcggacctccatatccacagcaagccataaaaggttg |
272 |
Q |
| |
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||||||| ||||| ||| || ||| |||| ||||||| || | |||||||||||| ||||| ||||||||||||||||| || ||||||| |||||| |
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| T |
46936791 |
ttgtggttccattgaaggtctttg-tgtt--cccacaagtgactctactgtcatagttcaatggtggacctccatatccacaacatgccataataggttg |
46936887 |
T |
|
| Q |
273 |
ttcaaaccctgcaaa |
287 |
Q |
| |
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||||||||||||||| |
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| T |
46936888 |
ttcaaaccctgcaaa |
46936902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 448 - 718
Target Start/End: Original strand, 46937192 - 46937462
Alignment:
| Q |
448 |
ttgagtagtttgcaatgaggtccaattttatggtaaagatatcaacatatgtaacatttagatctagatactggccctgcaattttgcccacaaagcttg |
547 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| ||||||||||||||||| |||||| |||| |||| || ||||||||||| |||| ||| || |
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| T |
46937192 |
ttgaatagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttactacacagagcatg |
46937291 |
T |
|
| Q |
548 |
caactgtagattaaaggccttagcagcttggttgtgtgcaccaagacatcctagttcatcaatctttgatttatcatggccaaatgtggcaacattttga |
647 |
Q |
| |
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| ||||| ||||||| ||| |||||||||| || ||| || ||||||||||||||||| ||||||| |||| |||||| |||||||||| ||| |
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| T |
46937292 |
aagttgtaggttaaaggttttaacagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaatttggcaacattctga |
46937391 |
T |
|
| Q |
648 |
cccaagcatccaagtggacctgtgttatgtacccaaaaattcctagccccgtggtcatatagtctctatca |
718 |
Q |
| |
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| ||||||||||| |||||||| || |||| ||| |||| |||||||| | ||||||||||||||||| |
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|
| T |
46937392 |
gctaagcatccaagaggacctgtattgtgtatccagaaatatctagccccctcatcatatagtctctatca |
46937462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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