View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4830-Insertion-10 (Length: 344)
Name: NF4830-Insertion-10
Description: NF4830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4830-Insertion-10 |
 | |
|
| [»] chr7 (13 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 39366200 - 39365864
Alignment:
| Q |
8 |
aggggacaatcagagccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgca |
107 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39366200 |
aggggacaatcggagccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgca |
39366101 |
T |
|
| Q |
108 |
aaggtatcttgcttctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgc |
207 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39366100 |
aaggtttcttgcttctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgc |
39366001 |
T |
|
| Q |
208 |
cagcaccggtcacacccatcagagccgtgagaacacctggtctgaaagctccactaagacccttcagaagaactaacttatcctcaataacacctcggtt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39366000 |
cagcaccggtcacacccatcagagccgtgagaacacctggtctgaaagctccactaagacccttcagaagaactaacttatcctcaataacacctcggtt |
39365901 |
T |
|
| Q |
308 |
tctcatttcctgtaatttcagttcaagtatttgataa |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39365900 |
tctcatttcctgtaatttcagttcaagtatttgataa |
39365864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 39547474 - 39547805
Alignment:
| Q |
8 |
aggggacaatcagagccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgca |
107 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
39547474 |
aggggacaatcggagccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgca |
39547573 |
T |
|
| Q |
108 |
aaggtatcttgcttctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39547574 |
aaggtatcttgcttctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagtacatccatcagagttgttttgc |
39547673 |
T |
|
| Q |
208 |
cagcaccggtcacacccatcagagccgtgagaacacctggtctgaaagctccactaagacccttcagaagaactaacttatcctcaataacacctcggtt |
307 |
Q |
| |
|
| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||| |||||| ||||||||||||| |||||||||||| |
|
|
| T |
39547674 |
ctgcaccagtcacacccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaagaaccaacttatcctcaacaacacctcggtt |
39547773 |
T |
|
| Q |
308 |
tctcatttcctgtaatttcagttcaagtattt |
339 |
Q |
| |
|
|| ||||||||| | |||||||||||||||| |
|
|
| T |
39547774 |
tcgcatttcctgcgagttcagttcaagtattt |
39547805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 39338847 - 39338511
Alignment:
| Q |
8 |
aggggacaatcagagccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgca |
107 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39338847 |
aggggacaatcggagccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatcagtttgctcacagtatccagaaattcttgca |
39338748 |
T |
|
| Q |
108 |
aaggtatcttgcttctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgc |
207 |
Q |
| |
|
||||| ||||||||||||||| |||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39338747 |
aaggtttcttgcttctttggaaagccggaaattttgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttcc |
39338648 |
T |
|
| Q |
208 |
cagcaccggtcacacccatcagagccgtgagaacacctggtctgaaagctccactaagacccttcagaagaactaacttatcctcaataacacctcggtt |
307 |
Q |
| |
|
|||||||||| | ||||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||| ||| |
|
|
| T |
39338647 |
cagcaccggtgatgcccatcagagcggtgagaacacctggtctgaaagctccacttacacccttcaaaagaactaacttatcctcaagaacacctctgtt |
39338548 |
T |
|
| Q |
308 |
tctcatttcctgtaatttcagttcaagtatttgataa |
344 |
Q |
| |
|
|||||||||||| || | |||| ||||||||| |||| |
|
|
| T |
39338547 |
tctcatttcctgcaaatccagtccaagtatttaataa |
39338511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 39538028 - 39538347
Alignment:
| Q |
20 |
gagccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtatcttgc |
119 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
39538028 |
gagccatgctgaatagagcaaagattcatagacagtaacataaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtatcttgc |
39538127 |
T |
|
| Q |
120 |
ttctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtca |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | |
|
|
| T |
39538128 |
ttctttggatagccagaaattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgcctgcacccgtga |
39538227 |
T |
|
| Q |
220 |
cacccatcagagccgtgagaacacctggtctgaaagctccactaagacccttcagaagaactaacttatcctcaataacacctcggtttctcatttcctg |
319 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |||||| ||| ||| ||||| |||||||||| ||||||||||||| |
|
|
| T |
39538228 |
cgcccatcagagcagtgagaacacctggtctgaaagctccactgagacctttcaaaagaaccaacatattctcaacaacacctcgggttctcatttcctg |
39538327 |
T |
|
| Q |
320 |
taatttcagttcaagtattt |
339 |
Q |
| |
|
|| |||||| |||| |||| |
|
|
| T |
39538328 |
caagttcagtccaaggattt |
39538347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 39564254 - 39564592
Alignment:
| Q |
9 |
ggggacaatcagagccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaa |
108 |
Q |
| |
|
|||||||| | |||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
39564254 |
ggggacaaccggagccatgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaa |
39564353 |
T |
|
| Q |
109 |
aggtatcttgcttctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgcc |
208 |
Q |
| |
|
|||| ||||||||||||||| |||| || |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39564354 |
aggtttcttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgcc |
39564453 |
T |
|
| Q |
209 |
agcaccggtcacacccatcagagccgtgagaacacctggtctgaaagctccactaagacccttcagaagaactaacttatcctcaataacacctcggttt |
308 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| | |||||||| |||||| ||||||||||||| ||||||| ||||| |
|
|
| T |
39564454 |
agcaccggtcacacccattagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaagaaccaacttatcctcaacaacacctaggttt |
39564553 |
T |
|
| Q |
309 |
ct---catttcctgtaatttcagttcaagtatttgataa |
344 |
Q |
| |
|
|| ||||||||| || |||||| |||||||||||||| |
|
|
| T |
39564554 |
cttcgcatttcctgcaagttcagtacaagtatttgataa |
39564592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 9 - 344
Target Start/End: Complemental strand, 39353689 - 39353354
Alignment:
| Q |
9 |
ggggacaatcagagccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaa |
108 |
Q |
| |
|
|||||||| | |||||||| || |||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39353689 |
ggggacaaccggagccatgttggatagagcaaagattcatagacagtaacataaggagaatggatatcagtttgctcacagtatccagaaattcttgcaa |
39353590 |
T |
|
| Q |
109 |
aggtatcttgcttctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgcc |
208 |
Q |
| |
|
|||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
39353589 |
aggtttcttgcttttttggatagccggaaattgtgatgttcccaccaatatatccaccggtttttctaccagaaagcacatccattagagttgtttttcc |
39353490 |
T |
|
| Q |
209 |
agcaccggtcacacccatcagagccgtgagaacacctggtctgaaagctccactaagacccttcagaagaactaacttatcctcaataacacctcggttt |
308 |
Q |
| |
|
|||||| || | ||||||||||||||||||||||||||||||||||||||||| | |||||| | ||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
39353489 |
agcaccagtgatgcccatcagagccgtgagaacacctggtctgaaagctccacttacaccctttaaaagaactaacttatcttcaagaacgcctcggttt |
39353390 |
T |
|
| Q |
309 |
ctcatttcctgtaatttcagttcaagtatttgataa |
344 |
Q |
| |
|
|||||||||| || | |||| |||||||||||||| |
|
|
| T |
39353389 |
ttcatttcctgcaaatccagtccaagtatttgataa |
39353354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 21 - 318
Target Start/End: Original strand, 39589315 - 39589612
Alignment:
| Q |
21 |
agccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtatcttgct |
120 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| || ||||||| |
|
|
| T |
39589315 |
agccatgctgaatagagcaaagattcatatacagtaacatgaggagagtggatatcattttgctcacagtatccagaaattcttgcaaatgtttcttgct |
39589414 |
T |
|
| Q |
121 |
tctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtcac |
220 |
Q |
| |
|
|||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| |||||||| || || |
|
|
| T |
39589415 |
tcttaggatatccagaaattgtgatggtcccaccaatatatccaccagtttttctaccagaaagcacatccaacaaagtagtttttccagcacccgtgac |
39589514 |
T |
|
| Q |
221 |
acccatcagagccgtgagaacacctggtctgaaagctccactaagacccttcagaagaactaacttatcctcaataacacctcggtttctcatttcct |
318 |
Q |
| |
|
||||| | ||| ||||||||||| || || ||| |||||| | ||| |||| |||||| |||||||||||| |||||| | || |||||||||| |
|
|
| T |
39589515 |
gcccattaaagcagtgagaacaccaggcctaaaaattccactgacacctttcaaaagaaccaacttatcctcatggacaccttgattcctcatttcct |
39589612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 12 - 253
Target Start/End: Original strand, 39622074 - 39622315
Alignment:
| Q |
12 |
gacaatcagagccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaagg |
111 |
Q |
| |
|
||||||| ||||||||| ||| |||| || |||||||| |||||||||| |||||||||||||| | |||| || ||||||||| ||| ||||||||||| |
|
|
| T |
39622074 |
gacaatcggagccatgccgaaaagagcaatgattcatatacagtaacataaggagaatggatataattttgttcacagtatccacaaactcttgcaaagg |
39622173 |
T |
|
| Q |
112 |
tatcttgcttctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagc |
211 |
Q |
| |
|
| || |||||||||| ||||||||| ||||||||| |||||||||||||||| | |||||||| |||| || |||||||||||||||||||||||||| |
|
|
| T |
39622174 |
tttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagc |
39622273 |
T |
|
| Q |
212 |
accggtcacacccatcagagccgtgagaacacctggtctgaa |
253 |
Q |
| |
|
||| ||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
39622274 |
accagtcacacccatcagagctgtgagaacagccggtctgaa |
39622315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 39575076 - 39575350
Alignment:
| Q |
20 |
gagccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtatcttgc |
119 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| |||| ||||||||| || |||||| ||||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
39575076 |
gagccatgctgaatagagcaaagactcatagaccgtaatatgaggagagtgtatatcattttgctcacagtatccggaaattcttgcaaaggtttcttgc |
39575175 |
T |
|
| Q |
120 |
ttctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtca |
219 |
Q |
| |
|
|| || |||| || || | |||||||||||||| ||||||||| ||| |||| ||||||| ||| |||||||||| |||||||||||||||||| || | |
|
|
| T |
39575176 |
tttttgggatgcccggaaactgtgatgttcccactaatatatcccccacttttcctaccagcaagtacatccatcaaagttgttttgccagcaccagtga |
39575275 |
T |
|
| Q |
220 |
cacccatcagagccgtgagaacacctggtctgaaagctccactaagacccttcagaagaactaacttatcctcaa |
294 |
Q |
| |
|
||||||| || || |||||||||||||| || |||||||| || | ||| |||| |||||| |||||||| |||| |
|
|
| T |
39575276 |
cacccataagtgcagtgagaacacctggcctaaaagctccgctgacaccgttcaaaagaaccaacttatcttcaa |
39575350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 1084816 - 1085013
Alignment:
| Q |
14 |
caatcagagccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggta |
113 |
Q |
| |
|
||||| |||||||||||||||||| ||||| || |||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| ||| || |
|
|
| T |
1084816 |
caatcggagccatgctgaatagagcaaagactcgtagacagtaaaatgaggagaatggatatctatttgctcacagtatccagaaattcttgtaaatgtt |
1084915 |
T |
|
| Q |
114 |
tcttgc--ttctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccag |
210 |
Q |
| |
|
|||||| |||| |||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
1084916 |
tcttgcttttctatggatagccagaaattatgatgttcccaccaatatatccatcagtttttctaccag-aagcacatccatcaaagttgttttgccag |
1085013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 1085062 - 1085123
Alignment:
| Q |
151 |
caccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcac |
213 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
1085062 |
caccaatgtatccatcagtttttctaccagaa-gcacatccatcaaagttgttttgccagcac |
1085123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 42171837 - 42172009
Alignment:
| Q |
42 |
gattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtatcttgcttctttggatagccagatattg |
141 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| | || |||||||| ||| ||||| || || || ||||| |||||| | || || ||||| |
|
|
| T |
42171837 |
gattcatagacagtaacatgaggagaatgaatatcattctgttcgcagtaaccactaattcgggcgaatgtttcttggttcttttggtaacctgatatgc |
42171936 |
T |
|
| Q |
142 |
tgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcacc |
214 |
Q |
| |
|
| || || || |||| ||||||||||||||||| |||| | |||||||| || ||||| || |||||||| |
|
|
| T |
42171937 |
taatatttccttcaatgtatccaccagtttttcttccagctaatacatccatgagtgttgtcttcccagcacc |
42172009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 42133023 - 42133087
Alignment:
| Q |
21 |
agccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcagtttgctc |
85 |
Q |
| |
|
|||||||| ||| | |||||||||||||||||||| |||| |||||||| |||||| ||||||| |
|
|
| T |
42133023 |
agccatgcagaaaatagtaaagattcatagacagttacatagggagaatgaatatcattttgctc |
42133087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 21 - 283
Target Start/End: Original strand, 44223164 - 44223426
Alignment:
| Q |
21 |
agccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtatcttgct |
120 |
Q |
| |
|
||||| || ||||| || ||||| ||||| || |||||||| || |||||||||||| | ||||| ||||| ||||||||||| ||||| || ||||||| |
|
|
| T |
44223164 |
agccacgccgaataaagcaaagactcataaactgtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgct |
44223263 |
T |
|
| Q |
121 |
tctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtcac |
220 |
Q |
| |
|
| || || || ||||| | |||||| ||| ||||||||||||| ||||| ||||||| || |||||||||||||||||||| ||||| || | || |
|
|
| T |
44223264 |
ttttagggtacccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttac |
44223363 |
T |
|
| Q |
221 |
acccatcagagccgtgagaacacctggtctgaaagctccactaagacccttcagaagaactaa |
283 |
Q |
| |
|
|||||||| ||| ||||||||||| || ||||| || ||||||| |||||||| ||| ||||| |
|
|
| T |
44223364 |
acccatcaaagctgtgagaacaccgggcctgaatgcaccactaacacccttcaaaagcactaa |
44223426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 283
Target Start/End: Original strand, 44233986 - 44234248
Alignment:
| Q |
21 |
agccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtatcttgct |
120 |
Q |
| |
|
||||| ||||| || || ||||| ||||| || ||||||||||| |||||||||||| | ||||| ||||| || || ||||| ||||| || ||||||| |
|
|
| T |
44233986 |
agccacgctgagtaaagcaaagactcataaactgtaacatgaggtgaatggatatcattctgctcacagtaaccggagattctagcaaatgtttcttgct |
44234085 |
T |
|
| Q |
121 |
tctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtcac |
220 |
Q |
| |
|
| || ||||| ||||| | |||||| ||| ||||||||||||| ||||| ||||||| || |||||||||||||||||||| ||||| || | || |
|
|
| T |
44234086 |
ttttaggatacccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttac |
44234185 |
T |
|
| Q |
221 |
acccatcagagccgtgagaacacctggtctgaaagctccactaagacccttcagaagaactaa |
283 |
Q |
| |
|
|||||||| |||||| || ||||| || ||||| || ||||||| |||||||| ||| ||||| |
|
|
| T |
44234186 |
acccatcaaagccgtaagtacaccaggcctgaatgcgccactaacacccttcaaaagcactaa |
44234248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 282
Target Start/End: Original strand, 44211002 - 44211263
Alignment:
| Q |
21 |
agccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtatcttgct |
120 |
Q |
| |
|
||||||||||| || || | |||||||| || ||||||||||| ||||| |||||| | || || ||||| ||||| ||||| ||||| || ||||||| |
|
|
| T |
44211002 |
agccatgctgagtaaagaagggattcataaactgtaacatgaggtgaatgaatatcattctgttcacagtagccagatattctagcaaatgtttcttgct |
44211101 |
T |
|
| Q |
121 |
tctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtcac |
220 |
Q |
| |
|
| || || || ||||| | |||||| ||| ||||||||||||| ||||| ||||||| || |||||||||||||||||||| ||||| || | || |
|
|
| T |
44211102 |
ttttagggtacccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttac |
44211201 |
T |
|
| Q |
221 |
acccatcagagccgtgagaacacctggtctgaaagctccactaagacccttcagaagaacta |
282 |
Q |
| |
|
|||||||| ||| ||||||||||| || ||||| || || |||| |||||||| ||| |||| |
|
|
| T |
44211202 |
acccatcaaagctgtgagaacaccgggcctgaatgcaccgctaacacccttcaaaagcacta |
44211263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 43457586 - 43457660
Alignment:
| Q |
50 |
gacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtatcttgcttctt |
124 |
Q |
| |
|
||||||||| || || ||||||||||| ||||| |||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
43457586 |
gacagtaacttgtggtgaatggatatcggtttgttcgcagtatccagaaattcttgcaaatgtttcttgattctt |
43457660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 21 - 319
Target Start/End: Complemental strand, 2877367 - 2877069
Alignment:
| Q |
21 |
agccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtatcttgct |
120 |
Q |
| |
|
||||| |||||||| ||||| || |||||||||||||| ||||| || ||||||||| | ||||| || || ||||| ||||| ||||| || ||||||| |
|
|
| T |
2877367 |
agccaagctgaatacagtaaggactcatagacagtaacttgaggggagtggatatcattctgctcacaatagccagagattctagcaaatgtttcttgct |
2877268 |
T |
|
| Q |
121 |
tctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtcac |
220 |
Q |
| |
|
| || || || ||||| ||| | ||| ||||| ||||||| |||| |||||| ||||||| | |||||||||| ||| ||||| ||||| || | || |
|
|
| T |
2877267 |
ttttagggtaaccagaaatttttatgctcccatcaatataaccactagttttcctaccagccaatacatccatcaaagtagttttaccagctccactaac |
2877168 |
T |
|
| Q |
221 |
acccatcagagccgtgagaacacctggtctgaaagctccactaagacccttcagaagaactaacttatcctcaataacacctcggtttctcatttcctg |
319 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||| || || ||||||| ||||||| ||| |||| | ||||||| || |||||| | | | |||||||||| |
|
|
| T |
2877167 |
acccatcaaagctgtgagaacaccaggtctaaatgcaccactaactcccttcaaaagcactagcctatcctctatcacaccttgatctttcatttcctg |
2877069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 292
Target Start/End: Complemental strand, 2887110 - 2886863
Alignment:
| Q |
45 |
tcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtatcttgcttctttggatagccagatattgtga |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||| || || ||||| |||| ||||| || ||||| || || || || ||||| ||| | | |
|
|
| T |
2887110 |
tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta |
2887011 |
T |
|
| Q |
145 |
tgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagccgtgagaacacc |
244 |
Q |
| |
|
|| |||| ||||||| ||||||||||| ||||||| | |||||||| | ||| ||||| ||||| || | || ||||| | || ||||||||||| |
|
|
| T |
2887010 |
tgctcccgtcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggctgtgagaacacc |
2886911 |
T |
|
| Q |
245 |
tggtctgaaagctccactaagacccttcagaagaactaacttatcctc |
292 |
Q |
| |
|
|| || || || ||||||| |||||||| ||| ||||| ||||||| |
|
|
| T |
2886910 |
aggcctaaatgcaccactaacacccttcaaaagtactaatctatcctc |
2886863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 292
Target Start/End: Original strand, 2897266 - 2897513
Alignment:
| Q |
45 |
tcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtatcttgcttctttggatagccagatattgtga |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||| || || ||||| |||| ||||| || ||||| | || | ||||| || ||| | | |
|
|
| T |
2897266 |
tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaattttta |
2897365 |
T |
|
| Q |
145 |
tgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagccgtgagaacacc |
244 |
Q |
| |
|
|| | ||| | ||||| ||||| ||||||||||||| | |||||||| | ||| ||||| ||||| || | || ||||| | || ||||||||||| |
|
|
| T |
2897366 |
tggtgccatcgatataaccaccggtttttctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaatgctgtgagaacacc |
2897465 |
T |
|
| Q |
245 |
tggtctgaaagctccactaagacccttcagaagaactaacttatcctc |
292 |
Q |
| |
|
|| || || || ||||||| |||||||| ||| ||||| ||||||| |
|
|
| T |
2897466 |
aggcctaaatgcaccactaacacccttcaaaagtactaatctatcctc |
2897513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 2160857 - 2161008
Alignment:
| Q |
21 |
agccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtatcttgct |
120 |
Q |
| |
|
|||||||| ||||| | ||||||||||| || ||||||| ||| |||||||||||| ||||||||| ||||| || || | ||||| || | ||| | |
|
|
| T |
2160857 |
agccatgccgaatataacaaagattcataaactgtaacattaggtgaatggatatcaaattgctcgcaatatcccgatatgcgagcaaatgttttttgat |
2160956 |
T |
|
| Q |
121 |
tctttggatagccagatattgtgatgttcccaccaatatatccaccagtttt |
172 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
2160957 |
tctttggatagccggatattgtgatgtttccatcaatatatccaccagtttt |
2161008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 223
Target Start/End: Original strand, 41687667 - 41687849
Alignment:
| Q |
41 |
agattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtatcttgcttctttggatagccagatatt |
140 |
Q |
| |
|
|||||||||||| |||| || ||||| || ||||| |||| || ||||||||| |||| |||||| || |||| ||||||||||| ||||||| |
|
|
| T |
41687667 |
agattcatagactgtaagatttggagagtgaatatcgttttgttcacagtatccactgattcgtgcaaaagttgcttggttctttggataaccagatacg |
41687766 |
T |
|
| Q |
141 |
gtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacc |
223 |
Q |
| |
|
| ||| |||| ||||||| |||||||||||||| |||| ||| |||||||| || || ||||| |||||||| || ||||| |
|
|
| T |
41687767 |
ctaatgctcccttcaatataaccaccagtttttcttccagcaagaacatccattagtgtggtttttccagcaccagttacacc |
41687849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 49773323 - 49773083
Alignment:
| Q |
20 |
gagccatgctgaatagagtaaagattcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtatcttgc |
119 |
Q |
| |
|
||||||||| ||||| | | ||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| || || | | ||| || |||||| |
|
|
| T |
49773323 |
gagccatgcagaataaacaagagattcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagaaaatgtttcttgc |
49773224 |
T |
|
| Q |
120 |
ttctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtca |
219 |
Q |
| |
|
||||| || || || ||||| ||||| | || || |||||| ||||| || ||||| ||||||||||| ||||||||||| ||||| || | | |
|
|
| T |
49773223 |
ttcttagggtacccggatatagtgatttgtccttgaacatatcctgttgttttccttccagacagcacatccattagagttgttttaccagctccactta |
49773124 |
T |
|
| Q |
220 |
cacccatcagagccgtgagaacacctggtctgaaagctcca |
260 |
Q |
| |
|
|||||| ||||| || ||||| |||||||| ||||||||| |
|
|
| T |
49773123 |
tacccattagagctgtcagaactcctggtctaaaagctcca |
49773083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 124
Target Start/End: Complemental strand, 4501368 - 4501297
Alignment:
| Q |
53 |
agtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtatcttgcttctt |
124 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||| || || || ||||||| |||||||||||| ||||| ||||| |
|
|
| T |
4501368 |
agtaacttgaggtgaatgaatatcagtttgttcacaataaccagaaactcttgcaaaggtttcttggttctt |
4501297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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