View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4830-Insertion-3 (Length: 660)

Name: NF4830-Insertion-3
Description: NF4830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4830-Insertion-3
NF4830-Insertion-3
[»] chr6 (5 HSPs)
chr6 (250-533)||(20613497-20613780)
chr6 (8-215)||(20613255-20613462)
chr6 (532-659)||(20613838-20613963)
chr6 (8-60)||(14533493-14533545)
chr6 (34-74)||(33582516-33582556)
[»] chr5 (4 HSPs)
chr5 (8-77)||(18768388-18768457)
chr5 (8-77)||(15974164-15974233)
chr5 (17-77)||(28866463-28866523)
chr5 (7-47)||(16716932-16716972)
[»] chr4 (3 HSPs)
chr4 (8-77)||(29096098-29096167)
chr4 (8-77)||(26494399-26494468)
chr4 (8-77)||(37987213-37987282)
[»] scaffold0060 (1 HSPs)
scaffold0060 (8-77)||(35658-35727)
[»] chr2 (4 HSPs)
chr2 (8-75)||(5887857-5887924)
chr2 (8-76)||(17303270-17303338)
chr2 (10-77)||(30076513-30076580)
chr2 (8-60)||(17623460-17623512)
[»] chr8 (3 HSPs)
chr8 (14-72)||(33012346-33012404)
chr8 (8-77)||(27084478-27084547)
chr8 (314-404)||(30117178-30117265)
[»] chr7 (3 HSPs)
chr7 (8-60)||(19362414-19362466)
chr7 (8-60)||(44598457-44598509)
chr7 (8-77)||(47520494-47520563)
[»] chr3 (4 HSPs)
chr3 (8-60)||(29438268-29438320)
chr3 (8-76)||(1829376-1829443)
chr3 (34-74)||(38639904-38639944)
chr3 (8-60)||(43615706-43615758)
[»] chr1 (4 HSPs)
chr1 (8-60)||(52453964-52454016)
chr1 (8-74)||(49289645-49289711)
chr1 (8-60)||(170887-170939)
chr1 (34-74)||(13658578-13658618)
[»] scaffold0006 (1 HSPs)
scaffold0006 (34-74)||(148339-148379)


Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 250 - 533
Target Start/End: Original strand, 20613497 - 20613780
Alignment:
Q  250 actattctccatgtaatcctatcaactggtatcagcaacatacacctccgatcattcaagattcatcaagaatcatatgcatcattctcttgatcattga 349  Q
    |||||||||| |  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20613497 actattctccctacaatcctatcaactggtatcagcaacatacacctccggtcattcaagattcatcaagaatcatatgcatcattctcttgatcattga 20613596  T
Q  350 ttagaagaagatggcaagtgcaattgatcaacttggaaacagttttagaggaaagatgaaagtctttttggttttcaaacctgtaaattgaggatattat 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20613597 ttagaagaagatggcaagtgcaattgatcaacttggaaacagttttagaggaaagatgaaagtctttttggttttcaaacctgtaaattgaggatattat 20613696  T
Q  450 tgtctaggcagatacttgacaacatatggaaaacaaaatacttacaattcctacctgatcataatcaaggcagaagtagagatg 533  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  20613697 tgtcttggcagatacttgacaacatttggaaaagaaaatacttaccattcctacttgatcataatcaaggcagaagtagagatg 20613780  T

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Target: chr6; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 20613255 - 20613462
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgccccttataagatccgccactagttatgtgttatgcaagtaattaaccata 107  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||||||| ||||||||||||||||||||||||    
T  20613255 ctaatatagtatataagggaaatctgggggatgccatggcacctacctgccccttataagatctgtcactagttacgtgttatgcaagtaattaaccata 20613354  T
Q  108 tgttataattagattattggggctatgtatgatatagaaaacctatcaccacatcgtatatgtatactattgaagtcaaggagttgttgcatacacaaaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20613355 tgttataattagattattggggctatgtatgatatagaaaacctatcaccacgtcgtatatgtatactattgaagtcaaggagttgttgcatacacaaaa 20613454  T
Q  208 attcacac 215  Q
    ||||||||    
T  20613455 attcacac 20613462  T

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Target: chr6; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 532 - 659
Target Start/End: Original strand, 20613838 - 20613963
Alignment:
Q  532 tggcagaggcgcgggttgttgcaactactggagtagcggtttgcactagagaagatcataatcgaggaatctatgggatttcatatacatgttattgaac 631  Q
    |||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20613838 tggcagaggcgcgg-ttgttgcaactattggagtagcagtttgcactagagaagatcataatcgaggaatctatgggatttcatatacacgttattgaac 20613936  T
Q  632 taggggtagaattgggattgagatttat 659  Q
    || |||||||||||||||||||||||||    
T  20613937 ta-gggtagaattgggattgagatttat 20613963  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 14533545 - 14533493
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgcccc 60  Q
    |||||||||||||| ||| || |||||||||| ||||||||||||||||||||    
T  14533545 ctaatatagtatatcaggaaactttgggggataccatggcacctgcctgcccc 14533493  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 33582556 - 33582516
Alignment:
Q  34 ggggatgccatggcacctgcctgccccttataagatccgcc 74  Q
    |||||||||||||||||||||||||| | | ||||||||||    
T  33582556 ggggatgccatggcacctgcctgcccttgagaagatccgcc 33582516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 18768388 - 18768457
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgccccttataagatccgccact 77  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||    
T  18768388 ctaatatagtatataagggaaacctgggggatgccatggcacctgcctgccccttagaagatccgccact 18768457  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 15974164 - 15974233
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgccccttataagatccgccact 77  Q
    |||||||||||||||||| |||| | |||||||||||||||||||||||||||||| |||||||||||||    
T  15974164 ctaatatagtatataaggaaaatctaggggatgccatggcacctgcctgccccttagaagatccgccact 15974233  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 28866463 - 28866523
Alignment:
Q  17 tatataagggaaatttgggggatgccatggcacctgcctgccccttataagatccgccact 77  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  28866463 tatataagggaaatctgggggatgccatggcacctgcctgccccttagaagatccgccact 28866523  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 16716972 - 16716932
Alignment:
Q  7 actaatatagtatataagggaaatttgggggatgccatggc 47  Q
    |||||||| ||||||||||||||| ||||||||||| ||||    
T  16716972 actaatattgtatataagggaaatatgggggatgccgtggc 16716932  T

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Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 29096167 - 29096098
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgccccttataagatccgccact 77  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  29096167 ctaatatagtaaataagggaaatctgggggatgccatggcacctgcctgccccttagaagatccgccact 29096098  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 26494468 - 26494399
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgccccttataagatccgccact 77  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||||||    
T  26494468 ctaatatagtatataagggaaatctgggggatgtcatggcacctgcctgccctttagaagatccgccact 26494399  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 37987213 - 37987282
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgccccttataagatccgccact 77  Q
    ||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  37987213 ctaatctaatatataagggaaatctgggggatgccatggcacctgcctgccccttagaagatccgccact 37987282  T

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Target: scaffold0060 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 35727 - 35658
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgccccttataagatccgccact 77  Q
    ||||||||||||||||||||||| |||||||||||||||||| || |||||||||| |||||||||||||    
T  35727 ctaatatagtatataagggaaatctgggggatgccatggcacttggctgccccttaaaagatccgccact 35658  T

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Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 5887924 - 5887857
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgccccttataagatccgcca 75  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  5887924 ctaatgtagtatataagggaaatctgggggatgccatggcacctacctgccccttagaagatccgcca 5887857  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 17303270 - 17303338
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgccccttataagatccgccac 76  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||||||| ||||| ||||||||||||    
T  17303270 ctaatatagtatataagggaaatctgggggatgccataacacctgcctgctccttagaagatccgccac 17303338  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 30076513 - 30076580
Alignment:
Q  10 aatatagtatataagggaaatttgggggatgccatggcacctgcctgccccttataagatccgccact 77  Q
    |||||||||||||| |||||| |||||||||||||  |||||||||| |||||| |||||||||||||    
T  30076513 aatatagtatataatggaaatctgggggatgccataacacctgcctgtcccttagaagatccgccact 30076580  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 17623460 - 17623512
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgcccc 60  Q
    |||||||||||||||||| || |||||||||| ||||| ||| || |||||||    
T  17623460 ctaatatagtatataaggaaactttgggggataccatgacacatgtctgcccc 17623512  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 33012346 - 33012404
Alignment:
Q  14 tagtatataagggaaatttgggggatgccatggcacctgcctgccccttataagatccg 72  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| |||||| ||||||||    
T  33012346 tagtatataagggaaatctgggggatgtcatggcacctgcctgtcccttagaagatccg 33012404  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 27084478 - 27084547
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgccccttataagatccgccact 77  Q
    |||||||||||||||||| || |||||||||||||||||||||||||| ||||  |  ||||||||||||    
T  27084478 ctaatatagtatataaggaaactttgggggatgccatggcacctgccttcccccaaagagatccgccact 27084547  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 314 - 404
Target Start/End: Original strand, 30117178 - 30117265
Alignment:
Q  314 atcaagaatcatatgcatcattctcttgatcattgattagaagaagatggcaagtgcaattgatcaacttggaaacagttttagaggaaag 404  Q
    |||||||||||| ||||||  || |||| ||||||||||||||| ||   ||||| | || ||||||||||||||||||||| ||||||||    
T  30117178 atcaagaatcatttgcatccctcacttgctcattgattagaagatga---caagtactatggatcaacttggaaacagttttggaggaaag 30117265  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 19362466 - 19362414
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgcccc 60  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||||||||    
T  19362466 ctaatatagtatataaggaaactttgggggataccatggcacctgcctgcccc 19362414  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 44598509 - 44598457
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgcccc 60  Q
    |||||||||||||||||| || |||||||||| ||||| ||||||||| ||||    
T  44598509 ctaatatagtatataaggaaactttgggggataccatgacacctgcctacccc 44598457  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 47520494 - 47520563
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgccccttataagatccgccact 77  Q
    |||||||||||||||| | ||| |||||||||| |||||| || ||||| |||| |  ||||||||||||    
T  47520494 ctaatatagtatataacgaaaacttgggggatgtcatggccccagcctgtccctgaagagatccgccact 47520563  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 29438320 - 29438268
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgcccc 60  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||||||||    
T  29438320 ctaatatagtatataaggaaactttgggggataccatggcacctgcctgcccc 29438268  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 1829443 - 1829376
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgccccttataagatccgccac 76  Q
    |||||||||||||||| |||||| || || |||||||| |||||||||||| |||| ||||||||||||    
T  1829443 ctaatatagtatataaaggaaatctgagg-atgccatgacacctgcctgcctcttagaagatccgccac 1829376  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 38639944 - 38639904
Alignment:
Q  34 ggggatgccatggcacctgcctgccccttataagatccgcc 74  Q
    |||||||||||||||||||||||||||| |  |||||||||    
T  38639944 ggggatgccatggcacctgcctgcccctgaagagatccgcc 38639904  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 43615758 - 43615706
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgcccc 60  Q
    |||||||||||||||||| || ||| ||||||  |||| ||||||||||||||    
T  43615758 ctaatatagtatataaggaaactttaggggataacatgacacctgcctgcccc 43615706  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 52453964 - 52454016
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgcccc 60  Q
    |||||||||||||||||| || |||||||||| ||||| ||| ||||||||||    
T  52453964 ctaatatagtatataaggaaactttgggggataccatgacacttgcctgcccc 52454016  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 49289711 - 49289645
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgccccttataagatccgcc 74  Q
    ||||||| |||||||||| |||| ||||||||||| ||||  | ||| |||||||| ||||||||||    
T  49289711 ctaatattgtatataaggaaaatctgggggatgccgtggcctccgccggccccttagaagatccgcc 49289645  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 170939 - 170887
Alignment:
Q  8 ctaatatagtatataagggaaatttgggggatgccatggcacctgcctgcccc 60  Q
    |||||||| ||||||||| || ||||||||||  |||||||||||||| ||||    
T  170939 ctaatatactatataaggaaactttgggggatatcatggcacctgccttcccc 170887  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 13658578 - 13658618
Alignment:
Q  34 ggggatgccatggcacctgcctgccccttataagatccgcc 74  Q
    |||||||||||||||||||||||||| | | ||||||||||    
T  13658578 ggggatgccatggcacctgcctgcccttgagaagatccgcc 13658618  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 148339 - 148379
Alignment:
Q  34 ggggatgccatggcacctgcctgccccttataagatccgcc 74  Q
    |||||||||||||||||||||||||| | | ||||||||||    
T  148339 ggggatgccatggcacctgcctgcccttgagaagatccgcc 148379  T

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