View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4830-Insertion-8 (Length: 476)
Name: NF4830-Insertion-8
Description: NF4830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4830-Insertion-8 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 122 - 392
Target Start/End: Original strand, 1419119 - 1419389
Alignment:
| Q |
122 |
ttaatgactcatcttggatcatcacatactacgctgcttctcattttactttgctgattgttttgtttgatatgaattgatgatatttacttactgcttc |
221 |
Q |
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| T |
1419119 |
ttaatgactcatcttggatcatcacatactacgctgcttctcattttactttgctgattgttttgtttgatatgaattgatgatatttacttacttcttc |
1419218 |
T |
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| Q |
222 |
tacnnnnnnngaccaaattcaagctgttccatatattttcgttactaccaaattatactacttaagttaaatcaaattctttagacaagactggtgaagg |
321 |
Q |
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| T |
1419219 |
tacaaaaaaagaccaaattcaagctgttccatatattttcgttactaccaaattatactacttaagttaaatcaaattctttagacaagactggtggagg |
1419318 |
T |
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| Q |
322 |
aggcctccaaatattatcttggtccaattgtaccttgacaaattcttctaataatacttttcccatttttg |
392 |
Q |
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| T |
1419319 |
aggcctccaaatattatcttggtccaattgtaccttgacaaattcttctaataatattttttccatttttg |
1419389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 1418958 - 1419006
Alignment:
| Q |
12 |
caccactccaaccaaggatggtcatgtattttctctaatatccctaaca |
60 |
Q |
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| T |
1418958 |
caccactccaaccaaggatggtcatgtattttttctaatatccctaaca |
1419006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 1419052 - 1419106
Alignment:
| Q |
76 |
tctttctttcaaattactcgtttcttataatgaatctttttagaaattaatgactcat |
133 |
Q |
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| T |
1419052 |
tctttctttcaaa---ctcgtttcttataatgaatctttttagaaattaatgactcat |
1419106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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