View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4830-Insertion-9 (Length: 463)

Name: NF4830-Insertion-9
Description: NF4830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4830-Insertion-9
NF4830-Insertion-9
[»] chr1 (1 HSPs)
chr1 (8-463)||(6454328-6454783)


Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 8 - 463
Target Start/End: Complemental strand, 6454783 - 6454328
Alignment:
Q  8 tgaacagcatgaacaaaatgggaatgaagggttgtagtccatctcattcttggagctctaacacttcttttaacaccattaacgactcttgtatttcgct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6454783 tgaacagcatgaacaaaatgggaatgaagggttgtagtccatctcattcttggagctctaacacttcttttaacaccattaacgactcttgtatttcgct 6454684  T
Q  108 tgaaatcgcggccatagatgtgaggttggaagtgttggttaaagtttcttgaaacaccttgaacttgatgacgatgaaggtgatgattatgatgatgtgg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6454683 tgaaatcgcggccatagatgtgaggttggaagtgttggttaaagtttcttgaaaccccttgaacttgatgacgatgaaggtgatgattatgatgatgtgg 6454584  T
Q  208 attcatcaattctgaatttccaaagcctgatctcaatgttgggtcacgttgatgaggatagataaatggattttcatggcttaactcacttccactacta 307  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6454583 attcatcaaatctgaatttccaaagcctaatctcaatgttgggtcacgttgatgaggatagataaatggattttcatggcttaattcacttccactacta 6454484  T
Q  308 gctgaatcagaagtagttgatattgaacatatatttgttattcctttgggttcagaatcagaaatattagaaggaagacttatgtttaaagataggtctg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6454483 gctgaatcagaagtagttgatattgaacatatatttgttattcctttgggttcagaatcagaaatattagaaggaagacttatgtttaaagataggtctg 6454384  T
Q  408 gttctaacaaaggtgaaaataaagtatgcattttaggatgtgatttaattagggta 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6454383 gttctaacaaaggtgaaaataaagtatgcattttaggatgtgatttaattagggta 6454328  T

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