View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4830_high_11 (Length: 328)
Name: NF4830_high_11
Description: NF4830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4830_high_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 328
Target Start/End: Complemental strand, 6455092 - 6454779
Alignment:
| Q |
7 |
tttggtgttgctcctgcaagtttaattacacaattaattaacatgatccataatcatatacttatattatacttccttgtaataaaagataagcnnnnnn |
106 |
Q |
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| T |
6455092 |
tttggtgttgctcctgcaagtttaattacacaattaactaacatgatccata--------cttatattatacttccttgtaataaaagataagcaaaaaa |
6455001 |
T |
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| Q |
107 |
ntacattaatcttgttttttccttatattttgttatggacatgttcatgttcttaccataatgaagaagaaatgataatgtttcatatcaaaataatcat |
206 |
Q |
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| T |
6455000 |
atacattaatcttgttttttcgttatattttgttatggacatgttcatgttctttccataatgaagaagaaatgataatatttcatatcaaaataatcat |
6454901 |
T |
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| Q |
207 |
gtatatattgattctatttgaataaagaacttaagtaaacacttacagaataaacacttatcgtataaaagtgcttatctaggataatattgcttacttt |
306 |
Q |
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| T |
6454900 |
gtatatattgattctatttgaataaagaacttaagtaaacgcttatagaataaacacttatcgtataaaagtgcttatctaggataatattgcttacttt |
6454801 |
T |
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| Q |
307 |
catgaccaccaagaagttgaac |
328 |
Q |
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| T |
6454800 |
catgaccaccaagtagttgaac |
6454779 |
T |
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