View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4830_high_12 (Length: 317)
Name: NF4830_high_12
Description: NF4830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4830_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 32508746 - 32508453
Alignment:
| Q |
1 |
aaaggttcataaatgtagcataaaatttgacaatttacataggcactggaagttgaagttccaatttatcatgatcttaatctaggactagattcccttc |
100 |
Q |
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| T |
32508746 |
aaaggttcataaaggtagcataaaatttgacaatttacataggcactggaagttgaagttccaatttatcatgatcttaatctatgactagattcccttc |
32508647 |
T |
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| Q |
101 |
tatgtaaccaatgagtccatgatgacatgcttaattattcagcaccatttttcaatgtttactcatgttgaagtaagattattaagcagcaaggcaatgc |
200 |
Q |
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| T |
32508646 |
tatgtaaccaatgagtccatgatgacatgcttaatttttcagcaccatttttcaatgt---------ttgaagtaagattattaagcagcaaggcaatgc |
32508556 |
T |
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| Q |
201 |
ctgaggtattatatatcttatttattcctttgcttcatgtttgagttcgtttttccaagattgatttaggaaaacgaatgcgatgtctattatcctatat |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32508555 |
ctgaggcattatatatcttatttattcctttgcttcatgtttgagttcgtttttccaagattgatttaggaaaacgaatgcgatgtctattatcctatat |
32508456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 21903961 - 21903846
Alignment:
| Q |
102 |
atgtaaccaatgagtccatgatgacatgcttaattattcagcaccatttttcaatgtttactcatgttgaagtaagattattaagcagcaaggcaatgcc |
201 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||| | ||||||||||||||| |||| | ||||||||||||||||||||||||||||| |
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| T |
21903961 |
atgtaacca-tgagtccatgatgacatgcataattattcagta-ttgttttcaatgtttacttgtgttcatgtaagattattaagcagcaaggcaatgcc |
21903864 |
T |
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| Q |
202 |
tgaggtattatatatctt |
219 |
Q |
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| T |
21903863 |
tgaggtattatatatctt |
21903846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 32513194 - 32513092
Alignment:
| Q |
117 |
ccatgatgacatgcttaattattcagcaccatttttcaatgtttactcatgttgaagtaagattattaagcagcaaggcaatgcctgaggtattatatat |
216 |
Q |
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|||||| ||| |||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||| ||||||||| ||||||||| |
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| T |
32513194 |
ccatgacgacgtgcttaatacttcagcaccatttttcaatgtttacttgtgttgatctaagattattaagcaacaaggcattgcctgaggcattatatat |
32513095 |
T |
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| Q |
217 |
ctt |
219 |
Q |
| |
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||| |
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| T |
32513094 |
ctt |
32513092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 32513337 - 32513242
Alignment:
| Q |
1 |
aaaggttcataaatgtagcataaaatttgacaatttacataggcactggaagttgaagttccaatttatcatgatcttaatctaggactagattcc |
96 |
Q |
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||||||||||||| ||||| |||||| ||| || |||||||||||||||||||| ||||||||| || |||||||||||||||||||||| |||| |
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| T |
32513337 |
aaaggttcataaaggtagcgtaaaatctgataacttacataggcactggaagttttagttccaatgtaacatgatcttaatctaggactaggttcc |
32513242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 21904095 - 21904001
Alignment:
| Q |
4 |
ggttcataaatgtagcataaaatttgacaatttacataggcactggaagttgaagttccaatttatcatgatcttaatctaggactagattccct |
98 |
Q |
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|||||||||| |||||||||||| ||| |||||||||||||||| |||||| ||||| || ||||||||||||||||||||||||| |||||| |
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| T |
21904095 |
ggttcataaaggtagcataaaatctgataatttacataggcactcgaagttttagttcagatgtatcatgatcttaatctaggactaggttccct |
21904001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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