View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4830_high_1_N (Length: 378)

Name: NF4830_high_1_N
Description: NF4830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4830_high_1_N
NF4830_high_1_N
[»] chr2 (8 HSPs)
chr2 (14-354)||(37958389-37958741)
chr2 (14-354)||(37896461-37896801)
chr2 (51-113)||(44905045-44905107)
chr2 (51-200)||(37952817-37952966)
chr2 (128-203)||(28166284-28166359)
chr2 (230-353)||(28166398-28166520)
chr2 (238-353)||(37952646-37952761)
chr2 (230-353)||(44905243-44905365)
[»] chr3 (2 HSPs)
chr3 (58-353)||(11527907-11528215)
chr3 (54-195)||(39712290-39712434)
[»] chr7 (2 HSPs)
chr7 (51-195)||(38757182-38757332)
chr7 (264-353)||(38757413-38757501)
[»] chr1 (4 HSPs)
chr1 (51-111)||(40768152-40768212)
chr1 (58-113)||(13228724-13228779)
chr1 (230-353)||(13228467-13228589)
chr1 (128-200)||(40768235-40768307)
[»] chr4 (2 HSPs)
chr4 (230-353)||(11149212-11149334)
chr4 (51-113)||(34538665-34538727)
[»] chr5 (1 HSPs)
chr5 (51-113)||(6535361-6535423)


Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 354
Target Start/End: Complemental strand, 37958741 - 37958389
Alignment:
Q  14 catcatcatcgttatcattttcatttctacatcttgttttaaccatactagcccaaatgaaaccacaagttacaacaaatttagataaaaattgtggcgc 113  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37958741 catcatcatcgttatcattttcctttctacatcttgttttaaccatactagcccaaatgaaaccacaagttacaacaaatttagataaaaattgtggcgc 37958642  T
Q  114 ttgaactccacaatcatttttcttccattgatcaagtgcccatattttcattctctcaatttcttcttttgcaaaaacaatagttgcttttacatactct 213  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37958641 ttgaacttcacaatcatttttcttccattgatcaagtgcccatattttcattctctcaatttcttcttttgcaaaaacaatagttgcttttacatactct 37958542  T
Q  214 tcttcactagtt------------tgaccaatgagtttatccttccatgtttttctttcttcaaaatagtctcttaagaaaacattttcaagcccttttg 301  Q
    ||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37958541 tcttcactagtttgactttgagtttgaccaatgagtttatccttccatgtttttctttcttcaaaatagtctcttaagaaaacattttcaagcccttttg 37958442  T
Q  302 ggtccctcaaaaaatttctatcaaaacaaggagttgacttcaagtcaactact 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37958441 ggtccctcaaaaaatttctatcaaaacaaggagttgacttcaagtcaactact 37958389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 354
Target Start/End: Original strand, 37896461 - 37896801
Alignment:
Q  14 catcatcatcgttatcattttcatttctacatcttgttttaaccatactagcccaaatgaaaccacaagttacaacaaatttagataaaaattgtggcgc 113  Q
    |||||||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  37896461 catcatcatcattatcattttcatttctatatcttgttttaaccaaactagaccaaatgaaaccacaagttacaacaaatttagataacaattgtggcgc 37896560  T
Q  114 ttgaactccacaatcatttttcttccattgatcaagtgcccatattttcattctctcaatttcttcttttgcaaaaacaatagttgcttttacatactct 213  Q
    ||||||| ||  |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37896561 ttgaacttcatgatcatttttcttccattgattaagtgcccatattttcattctctcaatttcctcttttgcaaaaacaatagttgcttttacatactct 37896660  T
Q  214 tcttcactagtttgaccaatgagtttatccttccatgtttttctttcttcaaaatagtctcttaagaaaacattttcaagcccttttgggtccctcaaaa 313  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  37896661 tcttcactagtttgaccaatgagtttctctttccatgtttttctttcttcaaaataatctcttaagaaaacattttcaagcccttttgggtccctaaaaa 37896760  T
Q  314 aatttctatcaaaacaaggagttgacttcaagtcaactact 354  Q
      ||||||||||||||||| |||||||||||||||||||||    
T  37896761 tttttctatcaaaacaaggtgttgacttcaagtcaactact 37896801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 44905045 - 44905107
Alignment:
Q  51 tttaaccatactagcccaaatgaaaccacaagttacaacaaatttagataaaaattgtggcgc 113  Q
    |||||| ||||||||||||| |||| |||||||||| ||||||||||||| ||||||||||||    
T  44905045 tttaactatactagcccaaacgaaagcacaagttacgacaaatttagatagaaattgtggcgc 44905107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 200
Target Start/End: Complemental strand, 37952966 - 37952817
Alignment:
Q  51 tttaaccatactagcccaaatgaaaccacaagttacaacaaatttagataaaaattgtggcgcttgaactccacaatcatttttcttccattgatcaagt 150  Q
    |||||||| |||| ||||||  ||| |||||||||||||| ||||||||| ||||||||| ||||| | | |   ||| ||||||||||||| ||  | |    
T  37952966 tttaaccaaactaacccaaacaaaagcacaagttacaacatatttagatagaaattgtggtgcttggatttcttgatcttttttcttccattcattcaat 37952867  T
Q  151 gcccatattttcattctctcaatttcttcttttgcaaaaacaatagttgc 200  Q
     ||||| ||||||| | ||| |||||||||||| | ||||||||| ||||    
T  37952866 acccattttttcatcccctcgatttcttcttttccgaaaacaataattgc 37952817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 28166284 - 28166359
Alignment:
Q  128 catttttcttccattgatcaagtgcccatattttcattctctcaatttcttcttttgcaaaaacaatagttgcttt 203  Q
    ||||||||||||||||||  ||| |  || ||||||| | |||||||||||||||| ||||||||||| |||||||    
T  28166284 catttttcttccattgattcagtacatattttttcatcccctcaatttcttcttttccaaaaacaataattgcttt 28166359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 353
Target Start/End: Original strand, 28166398 - 28166520
Alignment:
Q  230 caatgagtttatccttccatgtttttctttcttcaaaatagtctcttaagaaaacattttcaagcccttttgggtccctcaaaaaatttctatcaaaaca 329  Q
    |||||||| ||  |||||||| ||||||   | |||||||||| || ||||||||||| ||||| |||||| ||||||||||||  | ||| ||||||||    
T  28166398 caatgagtctaggcttccatgattttctcattgcaaaatagtcactgaagaaaacattctcaagtcctttt-ggtccctcaaaacttctctgtcaaaaca 28166496  T
Q  330 aggagttgacttcaagtcaactac 353  Q
    |||   ||||||||| ||||||||    
T  28166497 aggtaatgacttcaattcaactac 28166520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 37952761 - 37952646
Alignment:
Q  238 ttatccttccatgtttttctttcttcaaaatagtctcttaagaaaacattttcaagcccttttgggtccctcaaaaaatttctatcaaaacaaggagttg 337  Q
    ||||||| |||||||||||||| |||| ||||| || ||||||| | || |||||| |||| |||||| | |||||  | ||| |||||||||||    |    
T  37952761 ttatcctcccatgtttttcttttttcataatagccttttaagaataaatcttcaagtccttctgggtctcgcaaaacttgtctgtcaaaacaaggttgcg 37952662  T
Q  338 acttcaagtcaactac 353  Q
    |||| |||||||||||    
T  37952661 acttgaagtcaactac 37952646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 353
Target Start/End: Original strand, 44905243 - 44905365
Alignment:
Q  230 caatgagtttatccttccatgtttttctttcttcaaaatagtctcttaagaaaacattttcaagcccttttgggtccctcaaaaaatttctatcaaaaca 329  Q
    |||||||| ||  |||||||| ||||||   | ||||||||||  | ||||||||||||||||| |||||| ||||||||||||  | ||| ||||||||    
T  44905243 caatgagtctaggcttccatgattttctcattgcaaaatagtcattgaagaaaacattttcaagtcctttt-ggtccctcaaaacttctctgtcaaaaca 44905341  T
Q  330 aggagttgacttcaagtcaactac 353  Q
    ||    ||||||||| ||||||||    
T  44905342 agatagtgacttcaattcaactac 44905365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 58 - 353
Target Start/End: Original strand, 11527907 - 11528215
Alignment:
Q  58 atactagcccaaatgaaaccacaagttacaacaaatttagataaaaattgtggcgcttgaactccacaatcatttttcttccattgatcaagtgcccata 157  Q
    ||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| |  | | |   ||||||||||||||||||||  |  || ||||    
T  11527907 atactagcccaaacgaaagcacaagttacaacaaatttagatagaaattgtggcgcgttgatttcgttatcatttttcttccattgattca--gcacata 11528004  T
Q  158 ---ttttcattctctcaatttcttcttttgcaaaaacaatagttgcttttacatactc------ttcttcactagtttgac------caatgagtttatc 242  Q
       ||||||| |||||||||||||||||| ||||||||||| |||| || ||| | ||      ||||||  |  ||||||      |||||||| |||     
T  11528005 tttttttcatcctctcaatttcttcttttccaaaaacaataattgccttaacaaaatcttgatgttcttccttgctttgactttcagcaatgagtctatg 11528104  T
Q  243 cttccatgtttttctttcttcaaaatagtctcttaagaaaacattttcaagcccttttgggtccctcaaaaaatttctatcaaaacaaggagttgacttc 342  Q
    |||||||| ||||||   | |||||||||| |||||||||||||  ||||| ||| |||||||||||||||  | ||| |||||||||||   ||| |||    
T  11528105 cttccatgattttctcattacaaaatagtcccttaagaaaacatcctcaagtcctcttgggtccctcaaaacttctctgtcaaaacaaggtagtgatttc 11528204  T
Q  343 aagtcaactac 353  Q
    || ||||||||    
T  11528205 aattcaactac 11528215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 39712290 - 39712434
Alignment:
Q  54 aaccatactagcccaaatgaaaccacaagttacaacaaatttagataaaaattgtggcgc-ttgaactc--cacaatcatttttcttccattgatcaagt 150  Q
    |||||||||||||||||  ||| || ||||||||||||||||||||| ||||| |||| | ||||  ||   |  ||||||||||||||||||||  ||     
T  39712290 aaccatactagcccaaacaaaagcagaagttacaacaaatttagatataaattttggcacgttgatttcattattatcatttttcttccattgattcagc 39712389  T
Q  151 gcccatattttcattctctcaatttcttcttttgcaaaaacaata 195  Q
     ||||| ||||||| | |||||||||||||||| ||||| |||||    
T  39712390 acccattttttcatcccctcaatttcttcttttccaaaagcaata 39712434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 195
Target Start/End: Original strand, 38757182 - 38757332
Alignment:
Q  51 tttaaccatactagcccaaatgaaaccacaagttacaacaaatttagataaaaattgtggcgc-ttgaactccaca-----atcatttttcttccattga 144  Q
    |||||| ||||||||||||| |||| |||||||||| ||||||||||||| ||||||| |||| ||||  |||  |       |||||||||||||||||    
T  38757182 tttaactatactagcccaaacgaaagcacaagttacgacaaatttagatagaaattgttgcgcgttgatttccttatcgttgccatttttcttccattga 38757281  T
Q  145 tcaagtgcccatattttcattctctcaatttcttcttttgcaaaaacaata 195  Q
    |  |||||  || ||||||| | |||||||||||||||| |||||||||||    
T  38757282 ttcagtgcatattttttcatcccctcaatttcttctttttcaaaaacaata 38757332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 353
Target Start/End: Original strand, 38757413 - 38757501
Alignment:
Q  264 aaaatagtctcttaagaaaacattttcaagcccttttgggtccctcaaaaaatttctatcaaaacaaggagttgacttcaagtcaactac 353  Q
    ||||| ||| || ||||||||||| ||||| |||||||| ||||||||||  | ||| |||||||||||   ||||||||| ||||||||    
T  38757413 aaaatggtcactgaagaaaacattctcaagtccttttgg-tccctcaaaacttctctgtcaaaacaaggtagtgacttcaattcaactac 38757501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 40768152 - 40768212
Alignment:
Q  51 tttaaccatactagcccaaatgaaaccacaagttacaacaaatttagataaaaattgtggc 111  Q
    |||||| ||||||||||||| |||| |||||||||| ||||||||||||| ||||||||||    
T  40768152 tttaactatactagcccaaacgaaatcacaagttacgacaaatttagatagaaattgtggc 40768212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 13228779 - 13228724
Alignment:
Q  58 atactagcccaaatgaaaccacaagttacaacaaatttagataaaaattgtggcgc 113  Q
    ||||||||||||| |||| |||||||||| ||||||||||||| ||||||||||||    
T  13228779 atactagcccaaacgaaagcacaagttacgacaaatttagatagaaattgtggcgc 13228724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 353
Target Start/End: Complemental strand, 13228589 - 13228467
Alignment:
Q  230 caatgagtttatccttccatgtttttctttcttcaaaatagtctcttaagaaaacattttcaagcccttttgggtccctcaaaaaatttctatcaaaaca 329  Q
    |||||||| ||  |||||||| |||||||  | |||||||||| || ||||||||||| |||||  ||||| ||||||||||||  | ||| ||||||||    
T  13228589 caatgagtctaggcttccatgattttcttattgcaaaatagtcactgaagaaaacattctcaagttctttt-ggtccctcaaaacttctctgtcaaaaca 13228491  T
Q  330 aggagttgacttcaagtcaactac 353  Q
    |||   ||||||||| ||||||||    
T  13228490 aggtagtgacttcaattcaactac 13228467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 40768235 - 40768307
Alignment:
Q  128 catttttcttccattgatcaagtgcccatattttcattctctcaatttcttcttttgcaaaaacaatagttgc 200  Q
    ||||||||||||||||||  ||| |  || ||||||| | |||||||||||||||| ||||||||||| ||||    
T  40768235 catttttcttccattgattcagtacatattttttcatcccctcaatttcttcttttccaaaaacaataattgc 40768307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 353
Target Start/End: Complemental strand, 11149334 - 11149212
Alignment:
Q  230 caatgagtttatccttccatgtttttctttcttcaaaatagtctcttaagaaaacattttcaagcccttttgggtccctcaaaaaatttctatcaaaaca 329  Q
    |||||||| ||| |||||||| ||||||   | |||||||||| || ||||||| ||| ||||| |||||||| ||||||||||  | ||||||||||||    
T  11149334 caatgagtctattcttccatgattttctcattgcaaaatagtcactgaagaaaatattctcaagtccttttgg-tccctcaaaacttctctatcaaaaca 11149236  T
Q  330 aggagttgacttcaagtcaactac 353  Q
    |||   || |||||| ||||||||    
T  11149235 aggtagtgtcttcaattcaactac 11149212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 34538665 - 34538727
Alignment:
Q  51 tttaaccatactagcccaaatgaaaccacaagttacaacaaatttagataaaaattgtggcgc 113  Q
    |||||| ||||||||||||| |||| || ||||||  ||||||||| ||| ||||||||||||    
T  34538665 tttaactatactagcccaaacgaaagcataagttatgacaaatttacatagaaattgtggcgc 34538727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 6535361 - 6535423
Alignment:
Q  51 tttaaccatactagcccaaatgaaaccacaagttacaacaaatttagataaaaattgtggcgc 113  Q
    |||||| |||||||| |||| |||| ||||| ||||  |||||||||||| ||||||||||||    
T  6535361 tttaactatactagctcaaacgaaagcacaaattacggcaaatttagatagaaattgtggcgc 6535423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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