View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4830_high_2 (Length: 362)
Name: NF4830_high_2
Description: NF4830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4830_high_2 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 95 - 354
Target Start/End: Original strand, 12473883 - 12474142
Alignment:
| Q |
95 |
cgggtaggtttaggatatcacatttcttcacatacaaatcacacaaaacataataataagaatgactaaataaaggttttaggatcaattttctcagaca |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12473883 |
cgggtaggtttaggatatcacatttcttcacatacaaatcacacaaaacatagtaataagaatgactaaataaaggttttaggatcaattttctcaaaca |
12473982 |
T |
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| Q |
195 |
cgcgagtcatctcacaacatctcaaaatgactccgtaaagtaagtaccaaaacataatagataaatctttgtttccttgatgtaacataaatagagaaag |
294 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
12473983 |
cgcgagtcatcctacaacatctcaaaatgactccacaaagtaagtaccaaaacataataggtaaatccttgtttccttgatgtaacataaatagagaaag |
12474082 |
T |
|
| Q |
295 |
gtaaacataattccaaaggaaagaaagtacacattgtcaatcaaccaaacataaactcca |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12474083 |
gtaaacataattccaaaggaaagaaagtacacattgtcaatcaaccaaacataaactcca |
12474142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 95 - 354
Target Start/End: Original strand, 12528292 - 12528551
Alignment:
| Q |
95 |
cgggtaggtttaggatatcacatttcttcacatacaaatcacacaaaacataataataagaatgactaaataaaggttttaggatcaattttctcagaca |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12528292 |
cgggtaggtttaggatatcacatttcttcacatacaaatcacacaaaacatagtaataagaatgactaaataaaggttttaggatcaattttctcaaaca |
12528391 |
T |
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| Q |
195 |
cgcgagtcatctcacaacatctcaaaatgactccgtaaagtaagtaccaaaacataatagataaatctttgtttccttgatgtaacataaatagagaaag |
294 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
12528392 |
cgcgagtcatcctacaacatctcaaaatgactccacaaagtaagtaccaaaacataataggtaaatccttgtttccttgatgtaacataaatagagaaag |
12528491 |
T |
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| Q |
295 |
gtaaacataattccaaaggaaagaaagtacacattgtcaatcaaccaaacataaactcca |
354 |
Q |
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| T |
12528492 |
gtaaacataattccaaaggaaagaaagtacacattgtcaatcaaccaaacataaactcca |
12528551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 12473603 - 12473700
Alignment:
| Q |
1 |
agataaaccctcatttgccctcgtcaaatacgtggacttaaaaatcatttt-ttaaaataaagtaaagagagatgaatgactaccatatcttaagcgg |
97 |
Q |
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||||||||||| || ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12473603 |
agataaacccttatatgccctcgtgaaatacgtggacttaaaaatcatttttttaaaataaagtaaagagagatgaatgactaccatatcttaagcgg |
12473700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 12528012 - 12528109
Alignment:
| Q |
1 |
agataaaccctcatttgccctcgtcaaatacgtggacttaaaaatcatttt-ttaaaataaagtaaagagagatgaatgactaccatatcttaagcgg |
97 |
Q |
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||||||||||| || ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12528012 |
agataaacccttatatgccctcgtgaaatacgtggacttaaaaatcatttttttaaaataaagtaaagagagatgaatgactaccatatcttaagcgg |
12528109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 204 - 354
Target Start/End: Original strand, 12464174 - 12464322
Alignment:
| Q |
204 |
tctcacaacatctcaaaatgactccgtaaagtaagtaccaaaacataatagataaatctttgtttccttgatgtaacataaatagagaaaggtaaacata |
303 |
Q |
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||||||||||||||||||||||||| ||| ||||||| ||||||||| |||||| || || | || ||||||||||||||||||| ||| | ||||| |
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| T |
12464174 |
tctcacaacatctcaaaatgactccacaaaataagtactaaaacataaaagataa-tccttcctcccctgatgtaacataaatagagcaagaaatacata |
12464272 |
T |
|
| Q |
304 |
attccaaaggaaagaaagtacacattgtcaatcaaccaaacataaactcca |
354 |
Q |
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|||| |||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
12464273 |
attctaaaggaaagaaagtacacattgctaatc-accaaacataaactcca |
12464322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 12464043 - 12464143
Alignment:
| Q |
59 |
aaagtaaagagagatgaatgactaccatatcttaagcgggtaggtttaggatatcacatttcttcacatacaaatcacacaaaacataataataagaatg |
158 |
Q |
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|||||||||| ||| ||||||||| ||||||||| | || | |||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
12464043 |
aaagtaaagaaagacgaatgactatgatatcttaaactcatatgcttaggatatcacctttcttcacatacaaatcacacaaaacatattaagaagaatg |
12464142 |
T |
|
| Q |
159 |
a |
159 |
Q |
| |
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| T |
12464143 |
a |
12464143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 12473474 - 12473533
Alignment:
| Q |
18 |
ccctcgtcaaatacgtggacttaaaaatcattttttaaaataaagtaaagagagatgaat |
77 |
Q |
| |
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||||||| ||| || ||||||||||||||||||| |||||||||||||||| ||| |||| |
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| T |
12473474 |
ccctcgtgaaagacatggacttaaaaatcattttctaaaataaagtaaagaaagacgaat |
12473533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 12527883 - 12527942
Alignment:
| Q |
18 |
ccctcgtcaaatacgtggacttaaaaatcattttttaaaataaagtaaagagagatgaat |
77 |
Q |
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||||||| ||| || ||||||||||||||||||| |||||||||||||||| ||| |||| |
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| T |
12527883 |
ccctcgtgaaagacatggacttaaaaatcattttctaaaataaagtaaagaaagacgaat |
12527942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 95 - 354
Target Start/End: Complemental strand, 12997 - 12736
Alignment:
| Q |
95 |
cgggtaggtttaggatatcacatttcttcacatacaaatcacacaaaacataataataagaatgactaaat-aaaggttttaggatcaattttctcagac |
193 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
12997 |
cgggtaggtttaggatatcacatttcttcacatacaaatcacacaaaacatagtaataagaatgactaaattaaaggttttaggatcaattttctcaaac |
12898 |
T |
|
| Q |
194 |
acgcgagtcatctcacaacatct-caaaatgactccgtaaagtaagtaccaaaacataatagataaatctttgtttccttgatgtaacataaatagagaa |
292 |
Q |
| |
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|||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
12897 |
acgcgagtcatcctacaacatctacaaaatgactccacaaagtaagtaccaaaacataataggtaaatccttgtttccttgatgtaacataaatagagaa |
12798 |
T |
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| Q |
293 |
aggtaaacataattccaaaggaaagaaagtacacattgtcaatcaaccaaacataaactcca |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12797 |
aggtaaacataattccaaaggaaagaaagtacacattgtcaatcaaccaaacataaactcca |
12736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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