View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4830_high_3 (Length: 360)
Name: NF4830_high_3
Description: NF4830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4830_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 25 - 191
Target Start/End: Original strand, 39366196 - 39366362
Alignment:
| Q |
25 |
cccctgacatcaatgctgaaaccagaaaggttagcatcagaatcacttgatatgtttccatcatattgcattcatgtacttacgttatttactaatcaat |
124 |
Q |
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| T |
39366196 |
cccctgacatcaatgctgaaaccagaaaggttagcatcagaatcacttgatatgtttccatcatattgcattcatgtacttacgttatttagtaatcaat |
39366295 |
T |
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| Q |
125 |
tacaattcattggttgggattattacattatcagaaaacatgagaataaaaatgtttgaaactgact |
191 |
Q |
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| T |
39366296 |
tacaattcattggttgggattattacattatcagaaaacatgagaataaaaatgtttgaaactgact |
39366362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 39338843 - 39338876
Alignment:
| Q |
25 |
cccctgacatcaatgctgaaaccagaaaggttag |
58 |
Q |
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| T |
39338843 |
cccctgacatcaatgctgaaaccagaaaggttag |
39338876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 39547478 - 39547445
Alignment:
| Q |
25 |
cccctgacatcaatgctgaaaccagaaaggttag |
58 |
Q |
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| T |
39547478 |
cccctgacatcaatgctgaaaccagaaaggttag |
39547445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 39353686 - 39353719
Alignment:
| Q |
25 |
cccctgacatcaatgctgaaaccagaaaggttag |
58 |
Q |
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| T |
39353686 |
ccccagacatcaatgctgaaaccagaaaggttag |
39353719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 249 - 360
Target Start/End: Original strand, 34899864 - 34899975
Alignment:
| Q |
249 |
ggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactt |
348 |
Q |
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| T |
34899864 |
ggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactt |
34899963 |
T |
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| Q |
349 |
tcaagttgagat |
360 |
Q |
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| T |
34899964 |
tcaagttgagat |
34899975 |
T |
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