View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4830_high_4 (Length: 355)
Name: NF4830_high_4
Description: NF4830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4830_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 432208 - 431877
Alignment:
| Q |
1 |
atcacaagcagcacttgctgctgataatgcactagacagcttccttgctttgataatggcacccccacgctgctgaacagttgtgatgaactcactgttt |
100 |
Q |
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| T |
432208 |
atcacaagcagcacttgctgctgataatgcactagacagcttccttgctttgataatggcacccccacgctgctgaacagttgtgatgaactcactgttt |
432109 |
T |
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| Q |
101 |
agcctaacacaagagaaaaatacacttaattacgtacctagtggaagaaattgctttgcattcatgtgcttggaatgaaactgaggtaccataccaatta |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| |||| |
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| T |
432108 |
agcctaacacaagagaaaaatacacttaattac----ctagtggaagaaattgctttgcat----gtgcttggagtgaaactgaggtacca-----atta |
432022 |
T |
|
| Q |
201 |
tcatcagcaactaattctctgacatgcttcttcccattacttgttgccacggttgcatggttgacgtctggatattgagttgatgagtgatttccccaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
432021 |
tcatcagcaactaattctctgacatgcttcttcccattacttgttgccacggttgcatggttgacgtctggatattgagttgaggagtgatttccccaaa |
431922 |
T |
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| Q |
301 |
tgataacatttttcacatcactaacatcaacatttagcttctctg |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
431921 |
tgataacatttttcacatcactaacatcaacatttagcttctctg |
431877 |
T |
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