View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4830_high_7 (Length: 335)
Name: NF4830_high_7
Description: NF4830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4830_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 148 - 325
Target Start/End: Complemental strand, 1418744 - 1418588
Alignment:
| Q |
148 |
caatttttagcttttaaacaattcaagtcggttcaacaattcatcaaatatgaaccgattccgaacattatattatactaccttttaaacaattcatata |
247 |
Q |
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| T |
1418744 |
caatttttagcttttaaacaattcaagtcggttcaacaattcatcaaatatgaaccggttccgaacattatattata---------------------ta |
1418666 |
T |
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| Q |
248 |
catacgtaaatggatctcttttataaacaacaaattactatctttcaaacaaagattaaagttcagtataacataaca |
325 |
Q |
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| T |
1418665 |
gatacgtaaatggatctcttttataaacaacaaattactatctttgaaacaaagattaaagttcagtataacataaca |
1418588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 1418957 - 1418893
Alignment:
| Q |
1 |
gtgatgaatatagtcagtcatatggtgtcaaaggcaatgtgcattgtgaaagaaatacctaaaat |
65 |
Q |
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| T |
1418957 |
gtgatgaatatagtcagtcatatggtgtcaaaggcaatgtgcattgtgaaagaaagacctaaaat |
1418893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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