View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4830_high_8 (Length: 334)
Name: NF4830_high_8
Description: NF4830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4830_high_8 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 26 - 334
Target Start/End: Complemental strand, 36991368 - 36991051
Alignment:
| Q |
26 |
gctgctgctgctgcactttctgcctgttgttgtgtaccaccacctccatagaaattactatgtgcacctcctcctcctatccccaacaaatccagtgtca |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36991368 |
gctgctgctgctgcactttctgcctgttgttgtgtaccacc---tccatagaaattactatgtgcacctcctcctcctatccccaacaaatccagtgtca |
36991272 |
T |
|
| Q |
126 |
ttacatctccaccacccttacttccactaatgttcataacattattactattacttgatgcac------------ctccaacaacactattaatgctttg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36991271 |
ttacatctccaccacccttacttccactaatgttcataacattattactattacttgatgcacctcctcctccacctccaacaacactattaatgctttg |
36991172 |
T |
|
| Q |
214 |
agtttgattgttttgttcaatgatcttcgataaagccttactttgatccaatatagcattaaacatatcaactccattcattccaacacctcctccattt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36991171 |
agtttgattgttttgttcaatgatcttcgataaagccttactttgatccaatatagcattaaacatatcaactccattcattccaacaccacctccattt |
36991072 |
T |
|
| Q |
314 |
attatcccatttgcattgaaa |
334 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
36991071 |
attatcccatttgcattgaaa |
36991051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 46621400 - 46621319
Alignment:
| Q |
220 |
attgttttgttcaatgatcttcgataaagccttactttgatccaatatagcattaaacatatcaactccattcattccaaca |
301 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||| ||||||| || |||| |||||| |||| |
|
|
| T |
46621400 |
attgttttgctcaatgatctttgataaggccttactttgatccaatatagaattgaacatattaaatccactcattctaaca |
46621319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University