View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4830_high_9 (Length: 329)
Name: NF4830_high_9
Description: NF4830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4830_high_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 329
Target Start/End: Complemental strand, 36635586 - 36635269
Alignment:
| Q |
12 |
tgttaatgcaagtcaattttgaccttctttatttttataataatttcatgtgttaactaatcaaaccatgaaactaaacaactcttgtaaactatgattt |
111 |
Q |
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| T |
36635586 |
tgttaatgcaagtcaattttgaccttctttatgtttataataattttatgtgttaactaatcaaatcatgaaactaaacaactcttgtaaactatgattt |
36635487 |
T |
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| Q |
112 |
caaaataaaaaatgtaaaccatgaattcaaaacaatcaatttgacgtataatctagcactgaaatcataaatgaagaataaaattttccagtcttaaatc |
211 |
Q |
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| T |
36635486 |
caaaataaaaaatgtaaaccatgaattcaaaacaatcaatttgacgtataatctagcattgaaatcataaatgaagaataaaattttccagtcttaaatc |
36635387 |
T |
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| Q |
212 |
acatttgtttataagagcttcaatgtcattcaagtttactataagaatcatctgttggttgcacgccggcatatatgtgaagaataaaattactatgaca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36635386 |
acatttgtttataagagcttcaatgtcattcaagtttactataacaatcatctattggttgcacgccggcatatatgtgaagaataaaattactatgaca |
36635287 |
T |
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| Q |
312 |
acaaatagactggattag |
329 |
Q |
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|||||||||||||||||| |
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| T |
36635286 |
acaaatagactggattag |
36635269 |
T |
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