View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4830_low_1 (Length: 228)
Name: NF4830_low_1
Description: NF4830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4830_low_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 6454779 - 6455000
Alignment:
| Q |
7 |
gttcaacttcttggtggtcatgaaagtaagcaatattatcctagataagcacttttatacgataagtgtttattctgtaagtgtttacttaagttcttta |
106 |
Q |
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| T |
6454779 |
gttcaactacttggtggtcatgaaagtaagcaatattatcctagataagcacttttatacgataagtgtttattctataagcgtttacttaagttcttta |
6454878 |
T |
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| Q |
107 |
ttcaaatagaatcaatatatacatgattattttgatatgaaatattatcatttcttcttcattatggtaagaacatgaacatgtccataaccaaatataa |
206 |
Q |
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| T |
6454879 |
ttcaaatagaatcaatatatacatgattattttgatatgaaatattatcatttcttcttcattatggaaagaacatgaacatgtccataacaaaatataa |
6454978 |
T |
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| Q |
207 |
ggaaaaaacaagattaatgtat |
228 |
Q |
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| T |
6454979 |
cgaaaaaacaagattaatgtat |
6455000 |
T |
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