View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4831-Insertion-2 (Length: 636)

Name: NF4831-Insertion-2
Description: NF4831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4831-Insertion-2
NF4831-Insertion-2
[»] chr6 (8 HSPs)
chr6 (381-636)||(13832635-13832886)
chr6 (222-313)||(13832480-13832571)
chr6 (221-305)||(14904653-14904737)
chr6 (221-305)||(16971257-16971341)
chr6 (8-63)||(19292943-19292999)
chr6 (222-305)||(6126459-6126542)
chr6 (222-305)||(26603540-26603623)
chr6 (23-63)||(29968734-29968774)
[»] chr4 (6 HSPs)
chr4 (381-636)||(7501632-7501884)
chr4 (221-313)||(7501939-7502031)
chr4 (221-260)||(50860399-50860438)
chr4 (23-63)||(8823620-8823660)
chr4 (221-297)||(5370957-5371033)
chr4 (23-63)||(16204744-16204784)
[»] scaffold0062 (1 HSPs)
scaffold0062 (222-305)||(69576-69659)
[»] chr2 (3 HSPs)
chr2 (222-305)||(15721019-15721102)
chr2 (222-302)||(39843116-39843196)
chr2 (23-63)||(43822926-43822966)
[»] scaffold0445 (1 HSPs)
scaffold0445 (222-299)||(6442-6519)
[»] chr3 (7 HSPs)
chr3 (222-289)||(23091814-23091881)
chr3 (8-63)||(47278349-47278404)
chr3 (268-305)||(6834210-6834247)
chr3 (221-302)||(49391094-49391175)
chr3 (8-63)||(8541101-8541157)
chr3 (22-63)||(27813516-27813557)
chr3 (222-278)||(27117682-27117738)
[»] chr7 (12 HSPs)
chr7 (221-289)||(34152954-34153022)
chr7 (221-289)||(34174102-34174170)
chr7 (222-305)||(42729837-42729920)
chr7 (222-285)||(22054929-22054992)
chr7 (8-61)||(27400254-27400307)
chr7 (222-303)||(37395740-37395821)
chr7 (221-305)||(32005847-32005931)
chr7 (23-73)||(44970065-44970115)
chr7 (222-295)||(11612020-11612093)
chr7 (23-63)||(11907776-11907816)
chr7 (7-63)||(44945008-44945064)
chr7 (23-63)||(49017059-49017099)
[»] chr1 (7 HSPs)
chr1 (222-294)||(41306688-41306760)
chr1 (222-294)||(12705931-12706003)
chr1 (221-305)||(51353162-51353246)
chr1 (8-62)||(43671435-43671489)
chr1 (222-278)||(17330917-17330973)
chr1 (23-63)||(46671544-46671584)
chr1 (222-289)||(1572628-1572695)
[»] chr8 (5 HSPs)
chr8 (221-294)||(31464957-31465030)
chr8 (222-289)||(3895518-3895585)
chr8 (220-295)||(42424135-42424210)
chr8 (23-63)||(19779882-19779921)
chr8 (8-63)||(37044972-37045028)
[»] chr5 (3 HSPs)
chr5 (8-63)||(37022978-37023034)
chr5 (221-278)||(27184413-27184470)
chr5 (7-63)||(31736909-31736965)
[»] scaffold0006 (1 HSPs)
scaffold0006 (8-63)||(230295-230350)
[»] scaffold0648 (1 HSPs)
scaffold0648 (8-63)||(4590-4646)
[»] scaffold0274 (1 HSPs)
scaffold0274 (8-63)||(4060-4116)


Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 381 - 636
Target Start/End: Original strand, 13832635 - 13832886
Alignment:
Q  381 atgtagtaaatagttaagaaaaacatgttataaaatcattcgcaaagatcacctcgcgtacacatggtcaatttagttttatttttctagagacacacat 480  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  13832635 atgtagtaaataattaagaaaaacatgttataaaatcattcgcaaagatcacctcacgtacac-tggtcaatttagttttatttttctagagacacacat 13832733  T
Q  481 ggtcaactataattcacatatataattaattataattatttttcaaataaagccattcttcatgggctttccgtataagcccatcccattagtaacccta 580  Q
    ||||||||||||||| |||||||   |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||    
T  13832734 ggtcaactataattcgcatatat---taattataattatttttcaaataaagtcattcttcatgggctttccttataagcccaacccattagtaacccta 13832830  T
Q  581 aattgtcacagtcatatgaaatcctgataatcaaatgcggacgcctactttgcctt 636  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  13832831 aattgtcacagtcatatgaaatcctgataatcaaatgcagccgcctactttgcctt 13832886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 222 - 313
Target Start/End: Original strand, 13832480 - 13832571
Alignment:
Q  222 caaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactggggttggaccgggggttcaacc 313  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||    
T  13832480 caaggtaatcaaaaccggaccggacattaaaccggtgtaggcatgggtttaaggttttgaggttcaaccggggttggaccgggggttcaacc 13832571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 221 - 305
Target Start/End: Complemental strand, 14904737 - 14904653
Alignment:
Q  221 ccaaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactggggttggaccgggg 305  Q
    |||||||||| |||| |||||||||||||||||||||||||  | || |||| ||||  |||||||||| ||||| | |||||||    
T  14904737 ccaaggtaattaaaatcggaccggtcattaaaccggtgtagataagggtttagggttcaaaggttcaaccggggtcgaaccgggg 14904653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 221 - 305
Target Start/End: Complemental strand, 16971341 - 16971257
Alignment:
Q  221 ccaaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactggggttggaccgggg 305  Q
    |||||||||||| ||||||||||| |||||||||||   |||||||| |||  ||||| |||||||||| ||| ||| |||||||    
T  16971341 ccaaggtaatcagaaccggaccggacattaaaccggcaaaggcatgggtttcgggtttgaaggttcaaccgggattgaaccgggg 16971257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 19292943 - 19292999
Alignment:
Q  8 atttatataaatattgggg-gtgcagtggtacctgagggtctctgaagagatccgcc 63  Q
    |||||||||||| |||||| ||||||||| ||||| |||||||||||||||||||||    
T  19292943 atttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccgcc 19292999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 222 - 305
Target Start/End: Original strand, 6126459 - 6126542
Alignment:
Q  222 caaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactggggttggaccgggg 305  Q
    ||||||||||| ||||||||||| ||||||||||||  ||| |||  ||| |||||| |||||||||| ||||| | |||||||    
T  6126459 caaggtaatcagaaccggaccggacattaaaccggtaaaggtatgtgtttgaggtttaaaggttcaaccggggtcgaaccgggg 6126542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 222 - 305
Target Start/End: Complemental strand, 26603623 - 26603540
Alignment:
Q  222 caaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactggggttggaccgggg 305  Q
    ||||||||| ||||||||||||| |||| |||||||||||| |||| || ||||||| | ||| |||| ||||||  |||||||    
T  26603623 caaggtaattaaaaccggaccggacattgaaccggtgtaggtatgggttcaaggtttaagggtccaaccggggttcaaccgggg 26603540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 29968734 - 29968774
Alignment:
Q  23 gggggtgcagtggtacctgagggtctctgaagagatccgcc 63  Q
    ||||||||||||| ||||| |||||||| ||||||||||||    
T  29968734 gggggtgcagtggcacctgggggtctctaaagagatccgcc 29968774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 381 - 636
Target Start/End: Complemental strand, 7501884 - 7501632
Alignment:
Q  381 atgtagtaaatagttaagaaaaacatgttataaaatcattcgcaaagatcacctcgcgtacacatggtcaatttagttttatttttctagagacacacat 480  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  7501884 atgtagtaaataattaagaaaaacatgttataaaatcattcgcaaagatcacctcacatacacatggtcaatttagttttatttttctagagacacacat 7501785  T
Q  481 ggtcaactataattcacatatataattaattataattatttttcaaataaagccattcttcatgggctttccgtataagcccatcccattagtaacccta 580  Q
    |||||| |||||||| |||||||   |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||    
T  7501784 ggtcaattataattcgcatatat---taattataattatttttcaaataaagccattcttcatgggctttccttataagcccaacccattagtaaccata 7501688  T
Q  581 aattgtcacagtcatatgaaatcctgataatcaaatgcggacgcctactttgcctt 636  Q
    |||||||||||||||||||||||||||||||||||||| | || ||||||||||||    
T  7501687 aattgtcacagtcatatgaaatcctgataatcaaatgcagccgtctactttgcctt 7501632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 7502031 - 7501939
Alignment:
Q  221 ccaaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactggggttggaccgggggttcaacc 313  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| ||||||||  |||||||||||||||||||||||    
T  7502031 ccaaggtaatcaaaaccggaccggacattaaatcggtgtaggcatgggtttaaggttttgaggttcaatcggggttggaccgggggttcaacc 7501939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 50860438 - 50860399
Alignment:
Q  221 ccaaggtaatcaaaaccggaccggtcattaaaccggtgta 260  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  50860438 ccaaggtaatcaaaaccggaccggacattaaaccggtgta 50860399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 8823620 - 8823660
Alignment:
Q  23 gggggtgcagtggtacctgagggtctctgaagagatccgcc 63  Q
    ||||||||||||| |||||||||||||| ||||||||||||    
T  8823620 gggggtgcagtggcacctgagggtctctaaagagatccgcc 8823660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 5371033 - 5370957
Alignment:
Q  221 ccaaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactggggttg 297  Q
    |||||||||||| ||| ||||||| |||||||||| || |||   || ||||||||||| ||||||||  |||||||    
T  5371033 ccaaggtaatcagaactggaccggacattaaaccgatgaaggagagggtttaaggttttgaggttcaatcggggttg 5370957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 16204784 - 16204744
Alignment:
Q  23 gggggtgcagtggtacctgagggtctctgaagagatccgcc 63  Q
    ||||||||||||| ||||| |||||||| ||||||||||||    
T  16204784 gggggtgcagtggcacctgggggtctctaaagagatccgcc 16204744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 222 - 305
Target Start/End: Complemental strand, 69659 - 69576
Alignment:
Q  222 caaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactggggttggaccgggg 305  Q
    ||||||||||||||||||||||| ||||||||||||| || ||||| ||||||||||| ||||||||| |||||||||||||||    
T  69659 caaggtaatcaaaaccggaccggacattaaaccggtggagacatgggtttaaggttttgaggttcaaccggggttggaccgggg 69576  T

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Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 222 - 305
Target Start/End: Complemental strand, 15721102 - 15721019
Alignment:
Q  222 caaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactggggttggaccgggg 305  Q
    ||||||||||||||||||||||| ||||||||||||| || ||||| ||||||||||| ||||||||| |||||||||||||||    
T  15721102 caaggtaatcaaaaccggaccggacattaaaccggtggagacatgggtttaaggttttgaggttcaaccggggttggaccgggg 15721019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 222 - 302
Target Start/End: Original strand, 39843116 - 39843196
Alignment:
Q  222 caaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactggggttggaccg 302  Q
    ||||||||||||||||||||||| | |||||||| ||||||||||| |||||||||||  |||||||| ||||||| ||||    
T  39843116 caaggtaatcaaaaccggaccggacgttaaaccgatgtaggcatgggtttaaggttttggggttcaaccggggttgaaccg 39843196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 43822926 - 43822966
Alignment:
Q  23 gggggtgcagtggtacctgagggtctctgaagagatccgcc 63  Q
    ||||||||||||| ||||| |||||||||||||||||||||    
T  43822926 gggggtgcagtggcacctgggggtctctgaagagatccgcc 43822966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 6442 - 6519
Alignment:
Q  222 caaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactggggttgga 299  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| ||||||||| ||| |||||    
T  6442 caaggtaatcaaaaccggaccggacattaaacccgtgtaggcatgggtttaaggttttgaggttcaaccgggattgga 6519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 23091881 - 23091814
Alignment:
Q  222 caaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaac 289  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||  ||||||||    
T  23091881 caaggtaatcaaaaccggaccggacattaaaccggtgtaggcatgggtttaaggttttggggttcaac 23091814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 47278349 - 47278404
Alignment:
Q  8 atttatataaatattgggggtgcagtggtacctgagggtctctgaagagatccgcc 63  Q
    |||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||    
T  47278349 atttatataaatattgggggtgcagtggcacctgggggtctctaaagagatccgcc 47278404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 6834210 - 6834247
Alignment:
Q  268 atttaaggttttaaggttcaactggggttggaccgggg 305  Q
    |||||||||||||||||||||| |||||||||||||||    
T  6834210 atttaaggttttaaggttcaaccggggttggaccgggg 6834247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 221 - 302
Target Start/End: Original strand, 49391094 - 49391175
Alignment:
Q  221 ccaaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactggggttggaccg 302  Q
    |||||||||||| ||||||||||| ||||||||||    |||||||| |||  ||||| |||||||||| ||||||| ||||    
T  49391094 ccaaggtaatcagaaccggaccggacattaaaccgacaaaggcatgggtttggggtttgaaggttcaaccggggttgaaccg 49391175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 8541157 - 8541101
Alignment:
Q  8 atttatataaatattggggg-tgcagtggtacctgagggtctctgaagagatccgcc 63  Q
    |||||||||||| ||||||| |||||||| ||||| |||||||| ||||||||||||    
T  8541157 atttatataaatgttggggggtgcagtggcacctgggggtctctaaagagatccgcc 8541101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 27813557 - 27813516
Alignment:
Q  22 tgggggtgcagtggtacctgagggtctctgaagagatccgcc 63  Q
    |||||||||||||| ||||| |||||||| ||||||||||||    
T  27813557 tgggggtgcagtggcacctgggggtctctaaagagatccgcc 27813516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 27117682 - 27117738
Alignment:
Q  222 caaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttt 278  Q
    |||||||||||||| |||||||| ||||||||| |||| || |||  ||||||||||    
T  27117682 caaggtaatcaaaatcggaccggacattaaaccagtgttggtatgagtttaaggttt 27117738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 34153022 - 34152954
Alignment:
Q  221 ccaaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaac 289  Q
    |||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||  ||||||||    
T  34153022 ccaaggtaatcaaaaccggaccggacgttaaaccggtgtaggcatgggtttaaggttttggggttcaac 34152954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 221 - 289
Target Start/End: Original strand, 34174102 - 34174170
Alignment:
Q  221 ccaaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaac 289  Q
    |||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||  ||||||||    
T  34174102 ccaaggtaatcaaaaccggaccggacgttaaaccggtgtaggcatgggtttaaggttttggggttcaac 34174170  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 222 - 305
Target Start/End: Complemental strand, 42729920 - 42729837
Alignment:
Q  222 caaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactggggttggaccgggg 305  Q
    |||||||||||||||||||||||  |||||||||||| || ||||  ||||||||||| ||||||||| ||||||||| |||||    
T  42729920 caaggtaatcaaaaccggaccggatattaaaccggtggagacatgtgtttaaggttttgaggttcaaccggggttggatcgggg 42729837  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 22054929 - 22054992
Alignment:
Q  222 caaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggtt 285  Q
    ||||||||||||||||||||||| |||||||||| ||||| ||||| ||||||||||| |||||    
T  22054929 caaggtaatcaaaaccggaccggacattaaaccgatgtagacatgggtttaaggttttgaggtt 22054992  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 27400307 - 27400254
Alignment:
Q  8 atttatataaatattgggggtgcagtggtacctgagggtctctgaagagatccg 61  Q
    |||||||||||| ||||||||||||||  ||||| |||||||||||||||||||    
T  27400307 atttatataaatgttgggggtgcagtgacacctgggggtctctgaagagatccg 27400254  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 222 - 303
Target Start/End: Original strand, 37395740 - 37395821
Alignment:
Q  222 caaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactggggttggaccgg 303  Q
    |||||||||||||||||||||||   |||||||||| |||  |||| || | ||||  |||||||||||||||| |||||||    
T  37395740 caaggtaatcaaaaccggaccggagtttaaaccggtctagatatgggttcagggttcaaaggttcaactggggtcggaccgg 37395821  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 305
Target Start/End: Original strand, 32005847 - 32005931
Alignment:
Q  221 ccaaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactggggttggaccgggg 305  Q
    |||||||||||||||||| |||||||||| ||||||||||   |||| ||  ||||||||||||  ||| ||||||  |||||||    
T  32005847 ccaaggtaatcaaaaccgaaccggtcattgaaccggtgtacctatgggttcgaggttttaaggtcgaaccggggttcaaccgggg 32005931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 44970115 - 44970065
Alignment:
Q  23 gggggtgcagtggtacctgagggtctctgaagagatccgcctcgggatgaa 73  Q
    ||||||||||||| ||||| | ||||||||||||||||||| | |||||||    
T  44970115 gggggtgcagtggcacctgggagtctctgaagagatccgcccctggatgaa 44970065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 295
Target Start/End: Original strand, 11612020 - 11612093
Alignment:
Q  222 caaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactggggt 295  Q
    ||||||||||| ||||||||||| ||| ||||||||  ||||| || ||  |||||| |||||||||| |||||    
T  11612020 caaggtaatcagaaccggaccggacatcaaaccggtaaaggcaagggttcgaggtttaaaggttcaaccggggt 11612093  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 11907776 - 11907816
Alignment:
Q  23 gggggtgcagtggtacctgagggtctctgaagagatccgcc 63  Q
    ||||||||||||| ||||| | |||||||||||||||||||    
T  11907776 gggggtgcagtggcacctgggagtctctgaagagatccgcc 11907816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 44945064 - 44945008
Alignment:
Q  7 aatttatataaatattgggggtgcagtggtacctgagggtctctgaagagatccgcc 63  Q
    |||||||||||| | |||||||| ||||| ||||| |||||||  ||||||||||||    
T  44945064 aatttatataaaaactgggggtggagtggcacctgggggtctccaaagagatccgcc 44945008  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 49017059 - 49017099
Alignment:
Q  23 gggggtgcagtggtacctgagggtctctgaagagatccgcc 63  Q
    ||||||||||||| ||||| |||||||| ||||||||||||    
T  49017059 gggggtgcagtggcacctgggggtctctaaagagatccgcc 49017099  T

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Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 41306688 - 41306760
Alignment:
Q  222 caaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactgggg 294  Q
    ||||||||||||||||||||||| || ||||||||| ||||||||| ||||||||||  ||||||||| ||||    
T  41306688 caaggtaatcaaaaccggaccggacaataaaccggtataggcatgggtttaaggtttagaggttcaaccgggg 41306760  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 12706003 - 12705931
Alignment:
Q  222 caaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactgggg 294  Q
    |||||||||||||||| |||||| || ||||||| | ||||||||| ||||||||||  ||||||||||||||    
T  12706003 caaggtaatcaaaaccagaccggacaataaaccgatataggcatgggtttaaggtttagaggttcaactgggg 12705931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 221 - 305
Target Start/End: Original strand, 51353162 - 51353246
Alignment:
Q  221 ccaaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactggggttggaccgggg 305  Q
    |||||||||||| ||||||||||| ||| ||||||||  |||||||| || | ||||| ||||| |||| ||||||| |||||||    
T  51353162 ccaaggtaatcagaaccggaccggacatcaaaccggtaaaggcatgggttcagggtttgaaggtccaaccggggttgaaccgggg 51353246  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 43671435 - 43671489
Alignment:
Q  8 atttatataaatattgggggtgcagtggtacctgagggtctctgaagagatccgc 62  Q
    |||||||||||  ||||||||||||||| ||||| |||||||| |||||||||||    
T  43671435 atttatataaaggttgggggtgcagtggcacctgggggtctctaaagagatccgc 43671489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 17330917 - 17330973
Alignment:
Q  222 caaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttt 278  Q
    ||||||||| |||| |||| ||| |||||||||||||| || |||||||||||||||    
T  17330917 caaggtaattaaaatcggatcggacattaaaccggtgttggtatggatttaaggttt 17330973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 46671544 - 46671584
Alignment:
Q  23 gggggtgcagtggtacctgagggtctctgaagagatccgcc 63  Q
    ||||||||||||| ||||| |||||||||||||||||||||    
T  46671544 gggggtgcagtggcacctgggggtctctgaagagatccgcc 46671584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 1572695 - 1572628
Alignment:
Q  222 caaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaac 289  Q
    |||||||||  ||||||||| || |||| |||||||||| ||| || || ||||||||||||||||||    
T  1572695 caaggtaattgaaaccggactggacattgaaccggtgtaagcacgggttcaaggttttaaggttcaac 1572628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 31465030 - 31464957
Alignment:
Q  221 ccaaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactgggg 294  Q
    ||||||||||  |||||||||||| |||| ||||| |||| |||||| || |||||||||||||||||| ||||    
T  31465030 ccaaggtaattgaaaccggaccggacattgaaccgatgtaagcatgggttcaaggttttaaggttcaaccgggg 31464957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 3895518 - 3895585
Alignment:
Q  222 caaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaac 289  Q
    ||||||||||||||||| ||||| ||||||||||||||   ||||| || ||||||| ||||||||||    
T  3895518 caaggtaatcaaaaccgaaccggacattaaaccggtgtgttcatgggttcaaggtttaaaggttcaac 3895585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 42424210 - 42424135
Alignment:
Q  220 gccaaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttttaaggttcaactggggt 295  Q
    ||||||||||||| ||||||||||  ||| ||||||||  |||||||| ||  |||||| |||||||||| |||||    
T  42424210 gccaaggtaatcagaaccggaccgaacatcaaaccggtaaaggcatgggttcgaggtttaaaggttcaaccggggt 42424135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 19779882 - 19779921
Alignment:
Q  23 gggggtgcagtggtacctgagggtctctgaagagatccgcc 63  Q
    ||||||||||||| ||||| |||||||||||||||||||||    
T  19779882 gggggtgcagtggcacctg-gggtctctgaagagatccgcc 19779921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 37045028 - 37044972
Alignment:
Q  8 atttatataaatattggggg-tgcagtggtacctgagggtctctgaagagatccgcc 63  Q
    |||||||||||| ||||||| |||||||| ||||| |||||| ||||||||| ||||    
T  37045028 atttatataaatgttggggggtgcagtggcacctgggggtctatgaagagattcgcc 37044972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 37022978 - 37023034
Alignment:
Q  8 atttatataaatattgggg-gtgcagtggtacctgagggtctctgaagagatccgcc 63  Q
    |||||||||||| |||||| ||||||||| ||||| |||||||||||||||||||||    
T  37022978 atttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccgcc 37023034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 27184470 - 27184413
Alignment:
Q  221 ccaaggtaatcaaaaccggaccggtcattaaaccggtgtaggcatggatttaaggttt 278  Q
    ||||||||||||||| |||||||| |||| ||||||| ||| ||||| ||||||||||    
T  27184470 ccaaggtaatcaaaatcggaccggacattgaaccggtatagtcatgggtttaaggttt 27184413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 31736909 - 31736965
Alignment:
Q  7 aatttatataaatattgggggtgcagtggtacctgagggtctctgaagagatccgcc 63  Q
    |||||||||||| | |||||||||||||| ||||| |||||||  ||||||| ||||    
T  31736909 aatttatataaaaactgggggtgcagtggcacctgggggtctccaaagagattcgcc 31736965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 230350 - 230295
Alignment:
Q  8 atttatataaatattgggggtgcagtggtacctgagggtctctgaagagatccgcc 63  Q
    |||||||||||| ||||||||||||||  ||||| |||||||| ||||||||||||    
T  230350 atttatataaatgttgggggtgcagtgacacctgggggtctctaaagagatccgcc 230295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 4590 - 4646
Alignment:
Q  8 atttatataaatattgggg-gtgcagtggtacctgagggtctctgaagagatccgcc 63  Q
    |||||||||||| |||||| ||||||||| ||||| |||||||| ||||||||||||    
T  4590 atttatataaatgttggggggtgcagtggcacctgggggtctctaaagagatccgcc 4646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 4060 - 4116
Alignment:
Q  8 atttatataaatattgggg-gtgcagtggtacctgagggtctctgaagagatccgcc 63  Q
    |||||||||||| |||||| ||||||||| ||||| |||||||| ||||||||||||    
T  4060 atttatataaatgttggggggtgcagtggcacctgggggtctctaaagagatccgcc 4116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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