View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4831-Insertion-3 (Length: 584)
Name: NF4831-Insertion-3
Description: NF4831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4831-Insertion-3 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 4e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 414 - 584
Target Start/End: Complemental strand, 24376943 - 24376773
Alignment:
| Q |
414 |
cgtggtttgaggtaggttttgtgcagttttatactcatgaacttgtttaattttgatgtttgttgaagttatgatttgaatgttgacgtgaattttgata |
513 |
Q |
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| T |
24376943 |
cgtggtttgaggtaggttttgtgcagttttatactcatgaacttgtttaattttgatgtttgttgaagttatgatttgaatgttgacgtgaattttgata |
24376844 |
T |
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| Q |
514 |
cttttgaactgaaaattagttaattctagttgttgggatgatttaagagggaaaaacagagaaatatgtga |
584 |
Q |
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| T |
24376843 |
cttttgaactgaaaattagttaattctagttgttggcatgatttaagagggaaaaacagagaaatatgtga |
24376773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 131 - 277
Target Start/End: Complemental strand, 24377226 - 24377080
Alignment:
| Q |
131 |
ttcaaacttcaaaaacaaacacttccttatagttacacttctatctctaacctaactgtcactgtttctctctctagggttttggagttcaaactccatc |
230 |
Q |
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| T |
24377226 |
ttcaaacttcaaaaacaaacacttccttatagttacacttctatctctaacctaactgtcactgtttctctctctagggttttggagttcaaactccatc |
24377127 |
T |
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| Q |
231 |
actctgagaaccgttctgaaaagctagtacaattatagtaggtaggg |
277 |
Q |
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| T |
24377126 |
actctgagaaccgttctgaaaagctagtacaattatagtaggtaggg |
24377080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 24377394 - 24377347
Alignment:
| Q |
8 |
tttaacacgtaatctgaatgaaccgtgacactatataacaacacaaca |
55 |
Q |
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| T |
24377394 |
tttaacacgtaatctgaatgaaccgtgacactatataacaacacaaca |
24377347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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