View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4831-Insertion-4 (Length: 501)
Name: NF4831-Insertion-4
Description: NF4831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4831-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 10 - 323
Target Start/End: Original strand, 12514436 - 12514749
Alignment:
| Q |
10 |
taatccataacaactccaaaccactcaaaccaagaaacactccattttaatcaaatttacttgttactaccttaatcaaatttgaacttcaacctcaacc |
109 |
Q |
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| T |
12514436 |
taatccataacaactccaaaccactcaaaccaagaaacactccattttaatcaaatttacttattactaccttaatcaaatttgaacttcaacctcaacc |
12514535 |
T |
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| Q |
110 |
ttgcattctatctaaatcttgatataatagttagtaataaatttcccatcttcttttccaccttatattatgactcatccaccaccacctcctaccccca |
209 |
Q |
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| T |
12514536 |
ttgcattctatctaaatcttgatataatagttagtaataaatttcccatcttcttttccaccttatattatgactcatccaccaccacctcctaccccca |
12514635 |
T |
|
| Q |
210 |
ctcccatacttatcttccccatgttagtctcttcaattcaatcacaatcataatcacaacttacccacctctttcttttcttcacttttctctctttgca |
309 |
Q |
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| T |
12514636 |
ctcccatacttatcttccccatgttagtctcttcaattcaatcacaatcataatcacaacttacccacctctttcttttcttcactgttctctctttgca |
12514735 |
T |
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| Q |
310 |
aagtacattgcaaa |
323 |
Q |
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|||||||||||||| |
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| T |
12514736 |
aagtacattgcaaa |
12514749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 400 - 501
Target Start/End: Original strand, 12514831 - 12514933
Alignment:
| Q |
400 |
tagtcaaatggaatctaaagaaggtgatgagagaaaa-aagaacacgaagtttctatgttaaagctattttcttttgctgactcttatgattatgtctta |
498 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12514831 |
tagtcaaatggaatccaaagaaggtgatgagagaaaaaaagaacacaaagtttctatgttaaagctattttcttttgctgactcttatgattatgtctta |
12514930 |
T |
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| Q |
499 |
atg |
501 |
Q |
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| T |
12514931 |
atg |
12514933 |
T |
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