View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4831-Insertion-5 (Length: 445)
Name: NF4831-Insertion-5
Description: NF4831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4831-Insertion-5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 190 - 445
Target Start/End: Complemental strand, 3641400 - 3641137
Alignment:
| Q |
190 |
ttttctgtaattttctgtaatgtattggcagcttttgtgtggatgaagttgcacaactttttgaactatgcatttttcctttgcttcatcaataatggca |
289 |
Q |
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| T |
3641400 |
ttttctgtaattttctgtaatgtattggcagctgttgtgtggatgaagttgcacaactttttgaactatgcatttttcctttgcttcatcaataatggca |
3641301 |
T |
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| Q |
290 |
cttcttcaactgattggtttggtttaataaatttcattttgcctatgaaaaagatatggataacagtctaatcaattttaaccttactgaatcttattga |
389 |
Q |
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| T |
3641300 |
cttcttcaactgattggtttggtttaataaatttcattttgcctatgaaaaagatatggataacagtctaatcaattttaaccttactgaatcttattga |
3641201 |
T |
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| Q |
390 |
gata--------atgacatagcaatttattagtgtaaactcacttcaaattacaagtgttttac |
445 |
Q |
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| T |
3641200 |
gataatgagttaatgacatagcaatttattagtgtaaactcatttcaaattacaagtgttttac |
3641137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 3641634 - 3641452
Alignment:
| Q |
8 |
caagcagtttcggtaacattttttacccacatatcttattgtatagatatttatatttgtaattagatatatttgtaaagcatgtacgctgacattgtaa |
107 |
Q |
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| T |
3641634 |
caagcagtttcggtaacattttttacccacatatcttattgtatagatatttatatttgtaattagatatatttgtcaagcatgtacgctgacattgtaa |
3641535 |
T |
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| Q |
108 |
agannnnnnnagcaaccttagacaatgccgcgatcaaggacctagaatgtactggtggaatcatgaagataaataagtgaaat |
190 |
Q |
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| T |
3641534 |
agatttttttagcaaccttagacaatgccgcgatcaaggacccagaatgtactggtggaatcatgaagataaataagtgaaat |
3641452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 400
Target Start/End: Complemental strand, 3644215 - 3644114
Alignment:
| Q |
299 |
ctgattggtttggtttaataaatttcattttgcctatgaaaaagatatggataacagtctaatcaattttaaccttactgaatcttattgagataatgac |
398 |
Q |
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|||||| ||||||||||||| ||||||||| ||||||||||| ||| |||||||||| ||||| |||| ||| | | ||||| |||| |||||||||||| |
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| T |
3644215 |
ctgattagtttggtttaatagatttcatttggcctatgaaaaggatgtggataacagactaattaattataagcctcctgaaccttactgagataatgac |
3644116 |
T |
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| Q |
399 |
at |
400 |
Q |
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|| |
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| T |
3644115 |
at |
3644114 |
T |
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