View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4831-Insertion-7 (Length: 399)
Name: NF4831-Insertion-7
Description: NF4831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4831-Insertion-7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 399
Target Start/End: Complemental strand, 34173207 - 34172816
Alignment:
| Q |
8 |
cttatttcatcaaattttaaagaacacaattcacctccctccatcgtttatgtttgaagtcacttattcaacatgaataagtttttgtcactcatagagt |
107 |
Q |
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| T |
34173207 |
cttatttcatcaaattttaaagaacacaattcacctccctccatcgtttatgtttgaagtcacttattcaacatgaataagtttttgtcactc-tagagt |
34173109 |
T |
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| Q |
108 |
ttacttacgtcgatagttttcaccctagtattataatgacaccatatgaagctatgtatgctagaagaaatataattgctcaatgttggtttgaaattgg |
207 |
Q |
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| T |
34173108 |
ttacttacgtcgatagttttcaccctagtattataatgacaccatatgaagctatctatgctagaagaaatataattgctcaatgttggtttgaaattgg |
34173009 |
T |
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| Q |
208 |
aagtagtcttgtattagagatggatgtggttcaataaaatattaaagcatctcatagtaagaataaaagcaaccatgaccggaggagaaaatacttgaac |
307 |
Q |
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| T |
34173008 |
aagtagtcttgtattagagatggatgtggttcaataaaatattaaagcatctcatagtaagaataaaagcaaccatgaccagaggagaaaatacttgaac |
34172909 |
T |
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| Q |
308 |
tttttagagggtgata-atatttttaagagtcacttcaacggttcaaccgcttaggttgggagagcattgaaaatgggtaaatttaactctca |
399 |
Q |
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| T |
34172908 |
tttttagagggtgatatatatttttaagagtcacttcaacggttcaaccgcttaggttgggagagcattgaaaatgggtaaattgaactctca |
34172816 |
T |
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