View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4831-Insertion-8 (Length: 297)

Name: NF4831-Insertion-8
Description: NF4831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4831-Insertion-8
NF4831-Insertion-8
[»] chr5 (9 HSPs)
chr5 (8-235)||(13411677-13411903)
chr5 (8-104)||(13418698-13418794)
chr5 (8-104)||(13425572-13425668)
chr5 (8-107)||(13386166-13386265)
chr5 (8-84)||(13453115-13453191)
chr5 (8-107)||(13389954-13390053)
chr5 (8-85)||(13394414-13394491)
chr5 (47-84)||(13378246-13378283)
chr5 (8-97)||(13412327-13412416)
[»] chr4 (1 HSPs)
chr4 (8-106)||(47600455-47600553)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 13411677 - 13411903
Alignment:
Q  8 gattatgtcaacacagcaatggagcgtgtccacaaatcagatgttaaatatcgatttgtgattgacattggaaacactcttaaaacaagcccttaaattt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13411677 gattatgtcaacacagcaatggagcgtgtccacaaatcagatgttaaatatcgatttgtgattgacattagaaacactcttaaaacaagcccttaaattt 13411776  T
Q  108 caataagtaataagtataagtaatttatctacatttgagatctttccaaataaacatttgcaaagtttttacttgtaatatttctattgtaatatgattg 207  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13411777 caataagtaataagtataagtaa-ttatctacatttgagatctttccaaataaacatttgcaaagtttttacttgtaatatttctattgtaatatgattg 13411875  T
Q  208 ttattgacggttgaaattatctataaga 235  Q
     |||||  ||||||||||||||| ||||    
T  13411876 ctattgttggttgaaattatctacaaga 13411903  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 13418794 - 13418698
Alignment:
Q  8 gattatgtcaacacagcaatggagcgtgtccacaaatcagatgttaaatatcgatttgtgattgacattggaaacactcttaaaacaagcccttaaa 104  Q
    ||||||||||||||||||||||||||| || | ||| ||||||||||||||||||| |||||||| |||||||| || || ||| ||||||||||||    
T  13418794 gattatgtcaacacagcaatggagcgtctcgataaagcagatgttaaatatcgattcgtgattgatattggaaatacgctgaaaccaagcccttaaa 13418698  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 13425668 - 13425572
Alignment:
Q  8 gattatgtcaacacagcaatggagcgtgtccacaaatcagatgttaaatatcgatttgtgattgacattggaaacactcttaaaacaagcccttaaa 104  Q
    ||||||||||||||||||||||||||| || | ||| ||||||| ||||||||||| || ||||| |||||||| || || ||| ||||||||||||    
T  13425668 gattatgtcaacacagcaatggagcgtctcgagaaagcagatgtgaaatatcgattcgttattgatattggaaatacactaaaaccaagcccttaaa 13425572  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 13386166 - 13386265
Alignment:
Q  8 gattatgtcaacacagcaatggagcgtgtccacaaatcagatgttaaatatcgatttgtgattgacattggaaacactcttaaaacaagcccttaaattt 107  Q
    |||||||| ||||||||||| |||||  ||| |||| ||||||| ||||||||||||||| | ||||||||||||||||| ||| ||||  |||||||||    
T  13386166 gattatgttaacacagcaattgagcgactcctcaaagcagatgtcaaatatcgatttgtgctcgacattggaaacactctgaaaccaagttcttaaattt 13386265  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 13453191 - 13453115
Alignment:
Q  8 gattatgtcaacacagcaatggagcgtgtccacaaatcagatgttaaatatcgatttgtgattgacattggaaacac 84  Q
    ||||||||||||||||| ||||||||  | |  ||| ||||||| |||||||||||||||||||| |||||||||||    
T  13453191 gattatgtcaacacagcgatggagcgccttcttaaagcagatgtgaaatatcgatttgtgattgatattggaaacac 13453115  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 13389954 - 13390053
Alignment:
Q  8 gattatgtcaacacagcaatggagcgtgtccacaaatcagatgttaaatatcgatttgtgattgacattggaaacactcttaaaacaagcccttaaattt 107  Q
    |||||||| ||||||||||| |||||  ||| |||| ||||||| ||||||||||||||| | || || ||||||||| | ||| ||||  |||||||||    
T  13389954 gattatgttaacacagcaattgagcgactcctcaaagcagatgtcaaatatcgatttgtgctcgatatcggaaacactttgaaaccaagttcttaaattt 13390053  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 13394414 - 13394491
Alignment:
Q  8 gattatgtcaacacagcaatggagcgtgtccacaaatcagatgttaaatatcgatttgtgattgacattggaaacact 85  Q
    |||||||| |||||||||||| ||||  ||| |||| ||||||| ||||||||||||||| | || || |||||||||    
T  13394414 gattatgttaacacagcaatgaagcgactcctcaaagcagatgtcaaatatcgatttgtgctcgatatcggaaacact 13394491  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 13378283 - 13378246
Alignment:
Q  47 gatgttaaatatcgatttgtgattgacattggaaacac 84  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  13378283 gatgtgaaatatcgatttgttattgacattggaaacac 13378246  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 13412416 - 13412327
Alignment:
Q  8 gattatgtcaacacagcaatggagcgtgtccacaaatcagatgttaaatatcgatttgtgattgacattggaaacactcttaaaacaagc 97  Q
    ||||||||||||||||||||| ||||| |    ||   ||| || |||||||||||||||||||| ||||||||||| || ||| |||||    
T  13412416 gattatgtcaacacagcaatgcagcgtcttgctaagggagacgtgaaatatcgatttgtgattgatattggaaacacactgaaaccaagc 13412327  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 47600553 - 47600455
Alignment:
Q  8 gattatgtcaacacagcaatggagcgtgtccacaaatcagatgttaaatatcgatttgtgattgacattggaaacactcttaaaacaagcccttaaatt 106  Q
    |||||||| ||||| |||||||||||  ||| |||| ||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||    
T  47600553 gattatgttaacactgcaatggagcgactcctcaaagcagatgtcaaatatcgatttgtgattgacattggaaacactctcaaaccaagctcttaaatt 47600455  T

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