View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4831_high_3 (Length: 435)
Name: NF4831_high_3
Description: NF4831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4831_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 4 - 418
Target Start/End: Original strand, 14609858 - 14610272
Alignment:
| Q |
4 |
tctgcctggttgtgacctctttgtttcgacggctgatcctgataaagagccgcctcttgtaactgccaataccattctttccatattagcagttgattat |
103 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14609858 |
tctgcctggttgtgacctctttgtgtcgacggctgatcctgataaagagccgcctcttgtaactgccaataccattctttccatattagcagttgattat |
14609957 |
T |
|
| Q |
104 |
ccagtggagaagctcgcttgttatgtttcagatgatggaggtgctcttttaacattcgaggccatggctgaggccgcaagttttgctgatttatgggttc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14609958 |
ccagtggagaagctcgcttgttatgtttcagatgatggaggtgctcttttaacattcgaggccatggctgaggctgcaagttttgctgatttatgggttc |
14610057 |
T |
|
| Q |
204 |
ccttttgtcgcaaacacaatattgagccaaggaatcctgattcttactttgcctcaaatgtcgatccaactaagaacaagagcagattagattttgtgaa |
303 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14610058 |
ccttttgtcgcaaacacaatattgagccaaggaatcctgattcttactttgcctcaaatgtcgatccaactaagaacaagagcagattagattttgtgaa |
14610157 |
T |
|
| Q |
304 |
ggatagaagaagggtgaagagggagtatgatgagttcaaggtgcgtataaatggccttccggagtcaattaggagaagatctgatgcatttaacgcaagg |
403 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14610158 |
ggatagaagaagggtgaagagggagtatgatgagttcaaggtgcgtataaatggccttccggagtcaattaggagaagatctgatgcatttaacgcaagg |
14610257 |
T |
|
| Q |
404 |
gaggaaatgaagaag |
418 |
Q |
| |
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||||||||||||||| |
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| T |
14610258 |
gaggaaatgaagaag |
14610272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 4 - 416
Target Start/End: Complemental strand, 14598618 - 14598206
Alignment:
| Q |
4 |
tctgcctggttgtgacctctttgtttcgacggctgatcctgataaagagccgcctcttgtaactgccaataccattctttccatattagcagttgattat |
103 |
Q |
| |
|
|||||||||||||||||||||||| || || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14598618 |
tctgcctggttgtgacctctttgtgtcaactgctgatcctgaaaaggagccgcctcttgtaactgccaataccattctttccatattagcagttgattac |
14598519 |
T |
|
| Q |
104 |
ccagtggagaagctcgcttgttatgtttcagatgatggaggtgctcttttaacattcgaggccatggctgaggccgcaagttttgctgatttatgggttc |
203 |
Q |
| |
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|| |||||||| ||||||||||||||||||||||||||||| ||||| || | || || || ||||||||||||||||||||||||||||||||||||| |
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|
| T |
14598518 |
cctgtggagaaactcgcttgttatgtttcagatgatggaggagctctcttgagttttgaagcgatggctgaggccgcaagttttgctgatttatgggttc |
14598419 |
T |
|
| Q |
204 |
ccttttgtcgcaaacacaatattgagccaaggaatcctgattcttactttgcctcaaatgtcgatccaactaagaacaagagcagattagattttgtgaa |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| ||||||||||| | | | ||||| ||||| |
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|
| T |
14598418 |
ccttttgtcgcaaacacaatattgagccaaggaatcctgattcttactttgcgttaaaaatcgatccaaccaagaacaagagtaaactggatttcgtgaa |
14598319 |
T |
|
| Q |
304 |
ggatagaagaagggtgaagagggagtatgatgagttcaaggtgcgtataaatggccttccggagtcaattaggagaagatctgatgcatttaacgcaagg |
403 |
Q |
| |
|
||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| || || |||||||||||||||||||||||||| ||||| |
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|
| T |
14598318 |
ggacagaagaagggtgaaaagggagtacgatgagttcaaagtgcgcataaatggccttcctgattctattaggagaagatctgatgcatttaatgcaaga |
14598219 |
T |
|
| Q |
404 |
gaggaaatgaaga |
416 |
Q |
| |
|
||||||||||||| |
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|
| T |
14598218 |
gaggaaatgaaga |
14598206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 38 - 253
Target Start/End: Complemental strand, 12194892 - 12194677
Alignment:
| Q |
38 |
gatcctgataaagagccgcctcttgtaactgccaataccattctttccatattagcagttgattatccagtggagaagctcgcttgttatgtttcagatg |
137 |
Q |
| |
|
||||| || |||||||| || ||||| || || |||||||||||||| || ||||||||||||| || || || || ||||| |||||||| || || | |
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| T |
12194892 |
gatccagaaaaagagccaccccttgttaccgcaaataccattctttcaattctagcagttgattaccctgttgataaactcgcatgttatgtctctgacg |
12194793 |
T |
|
| Q |
138 |
atggaggtgctcttttaacattcgaggccatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaa |
237 |
Q |
| |
|
| || ||| | ||| |||| || ||||||||||| ||||| ||||||||||| || || |||||||| |||||||| || ||| | ||||| |||||||| |
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| T |
12194792 |
acggcggttcacttctaacttttgaggccatggccgaggcagcaagttttgcggagttgtgggttcctttttgtcggaagcacgacattgaaccaaggaa |
12194693 |
T |
|
| Q |
238 |
tcctgattcttacttt |
253 |
Q |
| |
|
|| || ||||||||| |
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| T |
12194692 |
cccggaatcttacttt |
12194677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 252
Target Start/End: Complemental strand, 29919210 - 29918979
Alignment:
| Q |
21 |
tctttgtttcgacggctgatcctgataaagagccgcctcttgtaactgccaataccattctttccatattagcagttgattatccagtggagaagctcgc |
120 |
Q |
| |
|
|||||||||| || ||||||||||| ||||| || || ||||| || || || ||||| | || || ||||| | ||| |||||||| |||||||| | |
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| T |
29919210 |
tctttgtttcaactgctgatcctgagaaagaaccaccacttgtcacagcaaacaccatcttgtcgattttagctgctgactatccagttgagaagctttc |
29919111 |
T |
|
| Q |
121 |
ttgttatgtttcagatgatggaggtgctcttttaacattcgaggccatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacac |
220 |
Q |
| |
|
||| |||||||| |||||||| ||||| |||||||| || ||||| ||||||||||| || || ||||| || |||||||| || || |||||||| |
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|
| T |
29919110 |
ttgctatgtttctgatgatgggggtgcacttttaacttttgaggcaatggctgaggctgctagctttgccaataactgggttccattctgccgcaaacat |
29919011 |
T |
|
| Q |
221 |
aatattgagccaaggaatcctgattcttactt |
252 |
Q |
| |
|
|||| ||||| ||||||||||| || ||||| |
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|
| T |
29919010 |
gatatagagcctaggaatcctgaatcatactt |
29918979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 29918938 - 29918886
Alignment:
| Q |
293 |
gattttgtgaaggatagaagaagggtgaagagggagtatgatgagttcaaggt |
345 |
Q |
| |
|
||||||||||||||| | |||||| ||||| | |||||||||||||||||||| |
|
|
| T |
29918938 |
gattttgtgaaggatcgtagaaggctgaagcgtgagtatgatgagttcaaggt |
29918886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 44632913 - 44633135
Alignment:
| Q |
21 |
tctttgtttcgacggctgatcctgataaagagccgcctcttgtaactgccaataccattctttccatattagcagttgattatccagtggagaagctcgc |
120 |
Q |
| |
|
|||||||||| || || ||||| || |||||||| |||||||||||||| || |||||| | || || | |||||||||||||| ||||| || | || |
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|
| T |
44632913 |
tctttgtttcaactgcagatccagaaaaagagccacctcttgtaactgcaaacaccattttatctatccttgcagttgattatcctgtggaaaaagttgc |
44633012 |
T |
|
| Q |
121 |
ttgttatgtttcagatgatggaggtgctcttttaacattcgaggccatggctgaggccgcaagttttgc-tgatttatgggttcccttttgtcgcaaaca |
219 |
Q |
| |
|
||||||| | || |||||||| || |||||||| ||||| || || | |||||| | || |||||||| ||||| |||||||| || ||| | ||||| |
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|
| T |
44633013 |
ttgttatttgtctgatgatggtggagctcttttgacatttgaagctcttgctgagactgctagttttgcaagattt-tgggttcctttctgtagaaaaca |
44633111 |
T |
|
| Q |
220 |
caatattgagccaaggaatcctga |
243 |
Q |
| |
|
| | ||||||||||| |||||||| |
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|
| T |
44633112 |
ccaaattgagccaagaaatcctga |
44633135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 47918105 - 47918178
Alignment:
| Q |
101 |
tatccagtggagaagctcgcttgttatgtttcagatgatggaggtgctcttttaacattcgaggccatggctga |
174 |
Q |
| |
|
|||||||| |||||||| |||| |||||||| |||||||||||||| |||||||| || |||| |||||||| |
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|
| T |
47918105 |
tatccagttgagaagctttcttgctatgtttctgatgatggaggtgcacttttaacttttaaggcaatggctga |
47918178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 345
Target Start/End: Original strand, 47918295 - 47918349
Alignment:
| Q |
291 |
tagattttgtgaaggatagaagaagggtgaagagggagtatgatgagttcaaggt |
345 |
Q |
| |
|
||||||||||||||||| | |||||| ||||| | |||||||||||||| ||||| |
|
|
| T |
47918295 |
tagattttgtgaaggatcgtagaaggctgaagcgtgagtatgatgagtttaaggt |
47918349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 41491900 - 41491819
Alignment:
| Q |
162 |
aggccatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctga |
243 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||||||| |||||||| || ||||| ||||| | |||||| ||||| |
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| T |
41491900 |
aggccatggaagaggcagcaagttttgctgatttgtgggttccattttgtcggaagcacaacattgacctaaggaaccctga |
41491819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 15419432 - 15419374
Alignment:
| Q |
194 |
ttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctgattcttactt |
252 |
Q |
| |
|
|||||||| || |||||||| ||||||||||| || ||||||||||| ||| ||||||| |
|
|
| T |
15419432 |
ttatgggtaccattttgtcgaaaacacaatatcgaaccaaggaatccagatgcttactt |
15419374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 15419721 - 15419657
Alignment:
| Q |
23 |
tttgtttcgacggctgatcctgataaagagccgcctcttgtaactgccaataccattctttccat |
87 |
Q |
| |
|
|||||||| || ||||||||||| ||||| ||||||||||| || || || || ||||||||||| |
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| T |
15419721 |
tttgtttcaaccgctgatcctgagaaagaaccgcctcttgtcacggcgaacacaattctttccat |
15419657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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